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replication_associated_protein
Euk-VirLake_Sarah-associated_circular_virus-13_Viruses.
replication_associated_protein__YP_009237522__Lake_Sarah-associated_circular_virus-13_Viruses.__X
Identity
- Accession:
- YP_009237522 ↗
- Protein ID:
- replication_associated_protein
- Kingdom:
- euk
Quality
80.9
mean pLDDT
Cluster
View cluster (5 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-105
Domain cluster:
rep: replication_associated_protein__YP_009237599__Lake_Sarah-associated_circular_molecule_10_Viruses.__X__D15-119
CATH (48)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6h8oA00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.88 | 80.0 | 7.97e-01 | 100.0% | 94.7% |
| 2hw0A00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.78 | 72.0 | 6.68e-01 | 100.0% | 82.6% |
| 1m55A00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.75 | 67.0 | 5.26e-01 | 97.9% | 86.0% |
| 1l2mA00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.74 | 67.0 | 6.23e-01 | 100.0% | 88.1% |
| 1f08B00 | 3.40.1310.10 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.72 | 66.0 | 5.68e-01 | 100.0% | 70.3% |
| 3m05B01 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.72 | 53.0 | 5.37e-01 | 76.6% | 100.0% |
| 1r9wA00 | 3.40.1310.10 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.71 | 64.0 | 5.64e-01 | 100.0% | 73.9% |
| 4ushA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.70 | 52.0 | 5.06e-01 | 77.7% | 88.3% |
| 1pbuA00 | 3.30.70.1010 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Translation elongation factor EF1B, gamma chain, conserved domain | 0.70 | 62.0 | 5.20e-01 | 98.9% | 73.5% |
| 3nrbB01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.69 | 49.0 | 5.19e-01 | 73.4% | 98.8% |
| 1rtzA00 | 3.30.70.560 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK | 0.69 | 59.0 | 5.04e-01 | 94.7% | 99.3% |
| 3c19A01 | 3.30.70.1380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transcriptional regulatory protein pf0864 domain like | 0.68 | 50.0 | 4.92e-01 | 76.6% | 85.9% |
| 2raqA01 | 3.30.70.1340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MTH889-like domain | 0.68 | 49.0 | 5.15e-01 | 76.6% | 92.9% |
| 2bvfA03 | 3.40.462.20 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › | 0.68 | 60.0 | 4.66e-01 | 100.0% | 69.5% |
| 2x3gA00 | 3.30.70.1910 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.67 | 56.0 | 5.27e-01 | 91.5% | 85.3% |
| 2jsxA01 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.67 | 47.0 | 5.25e-01 | 72.3% | 97.2% |
| 3pfoA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.67 | 49.0 | 4.39e-01 | 76.6% | 99.2% |
| 2kjwA00 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.66 | 47.0 | 4.69e-01 | 73.4% | 85.4% |
| 3ibwA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.66 | 47.0 | 5.05e-01 | 74.5% | 97.5% |
| 2joqA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.66 | 45.0 | 4.94e-01 | 71.3% | 100.0% |
| 2bj3D02 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.66 | 47.0 | 4.97e-01 | 74.5% | 96.3% |
| 2ywwA01 | 3.30.70.140 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aspartate carbamoyltransferase regulatory subunit, N-terminal domain | 0.65 | 48.0 | 4.87e-01 | 77.7% | 84.6% |
| 1gpjA01 | 3.30.460.30 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Glutamyl-tRNA reductase, N-terminal domain | 0.63 | 55.0 | 4.83e-01 | 98.9% | 74.5% |
| 3vteA03 | 3.40.462.20 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › | 0.62 | 55.0 | 4.42e-01 | 98.9% | 68.1% |
| 2ijrA01 | 3.30.70.1270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Api92-like domains | 0.62 | 45.0 | 4.46e-01 | 75.5% | 76.3% |
| 3f44A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 53.0 | 4.20e-01 | 98.9% | 95.2% |
| 3popA02 | 3.40.462.20 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › | 0.61 | 53.0 | 4.00e-01 | 98.9% | 61.5% |
| 2qrrA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.61 | 45.0 | 4.46e-01 | 77.7% | 87.6% |
| 1wi8A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.61 | 42.0 | 4.57e-01 | 72.3% | 98.7% |
| 3bguA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 44.0 | 4.40e-01 | 76.6% | 100.0% |
| 5d79A03 | 3.40.462.20 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › | 0.60 | 53.0 | 4.25e-01 | 98.9% | 65.8% |
| 3gz7B00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 44.0 | 4.34e-01 | 79.8% | 96.9% |
| 3amiA02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.58 | 42.0 | 3.35e-01 | 75.5% | 89.4% |
| 2go8A01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 40.0 | 4.39e-01 | 75.5% | 97.3% |
| 3r8jA00 | 3.20.80.10 | Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain | 0.57 | 49.0 | 4.01e-01 | 97.9% | 74.4% |
| 3e3pA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.55 | 38.0 | 4.12e-01 | 71.3% | 88.5% |
| 2govA01 | 3.20.80.10 | Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain | 0.55 | 47.0 | 3.95e-01 | 98.9% | 78.0% |
| 4za1C00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 40.0 | 4.09e-01 | 79.8% | 96.7% |
| 2h5fB00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.54 | 30.0 | 3.24e-01 | 83.0% | 63.5% |
| 2bbaA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.54 | 38.0 | 3.11e-01 | 74.5% | 63.2% |
| 2n99A00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.53 | 35.0 | 3.77e-01 | 94.7% | 82.9% |
| 3d2uA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 35.0 | 3.62e-01 | 71.3% | 90.2% |
| 3lurA00 | 3.20.80.10 | Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain | 0.52 | 43.0 | 3.74e-01 | 96.8% | 81.0% |
| 2l03A00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.51 | 33.0 | 3.62e-01 | 93.6% | 83.8% |
| 2mj0A00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.51 | 31.0 | 3.47e-01 | 92.6% | 83.3% |
| 6wl5A01 | 3.20.80.10 | Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain | 0.51 | 42.0 | 3.75e-01 | 97.9% | 83.2% |
| 1jyhA00 | 3.20.80.10 | Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain | 0.50 | 42.0 | 3.69e-01 | 97.9% | 81.9% |
| 4dn9B00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 44.0 | 4.39e-01 | 98.9% | 99.0% |
ECOD (86)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2391478 | 304.55.1.5 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Viral_Rep | 0.88 | 80.0 | 7.97e-01 | 100.0% | 94.7% |
| 3624100 | 304.55.1.0 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains | 0.83 | 59.0 | 6.21e-01 | 73.4% | 84.7% |
| 3621982 | 304.55.1.5 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Viral_Rep | 0.81 | 75.0 | 7.11e-01 | 100.0% | 84.5% |
| 2796430 | 304.55.1.5 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Viral_Rep | 0.80 | 74.0 | 7.22e-01 | 100.0% | 91.3% |
| 4133039 | 304.8.1.81 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › REP_ORF2-G2P | 0.77 | 70.0 | 5.74e-01 | 98.9% | 86.7% |
| 4315665 | 304.8.1.91 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF1424 | 0.75 | 67.0 | 5.14e-01 | 98.9% | 80.5% |
| 4218099 | 304.55.1.1 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Gemini_AL1 | 0.75 | 68.0 | 6.02e-01 | 100.0% | 92.6% |
| 4304749 | 304.8.1.81 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › REP_ORF2-G2P | 0.74 | 67.0 | 4.84e-01 | 98.9% | 51.9% |
| 4945049 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.74 | 56.0 | 5.65e-01 | 80.9% | 84.2% |
| 3587109 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.73 | 54.0 | 5.59e-01 | 77.7% | 84.4% |
| 3375878 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.73 | 51.0 | 5.58e-01 | 71.3% | 93.3% |
| 5051275 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.73 | 49.0 | 5.46e-01 | 70.2% | 86.7% |
| 2791434 | 304.55.1.10 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › PPV_E1_DBD | 0.73 | 67.0 | 5.65e-01 | 100.0% | 67.1% |
| 4927291 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.73 | 52.0 | 5.42e-01 | 73.4% | 94.1% |
| 4030594 | 304.46.1.1 ↗ | a+b two layers › Alpha-beta plaits › eEF1-gamma domain › eEF1-gamma domain › EF1G | 0.73 | 65.0 | 5.46e-01 | 98.9% | 72.5% |
| 5047334 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.72 | 55.0 | 5.53e-01 | 80.9% | 94.7% |
| 4007701 | 1075.1.2.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX | 0.72 | 51.0 | 3.26e-01 | 74.5% | 16.3% |
| 4150055 | 304.5.1.5 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › HisG_C | 0.71 | 52.0 | 5.62e-01 | 76.6% | 94.9% |
| 5039693 | 304.16.1.1 ↗ | a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE | 0.71 | 51.0 | 5.29e-01 | 75.5% | 97.8% |
| 5112 | 304.55.1.10 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › PPV_E1_DBD | 0.71 | 64.0 | 5.64e-01 | 100.0% | 73.9% |
| 4220147 | 304.126.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C | 0.71 | 51.0 | 5.39e-01 | 75.5% | 89.4% |
| 4936431 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.71 | 51.0 | 5.66e-01 | 75.5% | 97.3% |
| 4928258 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.71 | 50.0 | 5.23e-01 | 73.4% | 95.2% |
| 3964912 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.71 | 50.0 | 5.56e-01 | 74.5% | 98.6% |
| 4407903 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.70 | 63.0 | 4.59e-01 | 98.9% | 56.5% |
| 5079732 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.70 | 51.0 | 5.25e-01 | 75.5% | 88.9% |
| 3285005 | 304.45.1.1 ↗ | a+b two layers › Alpha-beta plaits › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › HPPK | 0.70 | 61.0 | 5.03e-01 | 96.8% | 99.4% |
| 4948334 | 304.16.1.1 ↗ | a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE | 0.70 | 51.0 | 5.27e-01 | 76.6% | 97.7% |
| 4243894 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.70 | 62.0 | 4.54e-01 | 98.9% | 56.1% |
| 4682347 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.70 | 62.0 | 4.47e-01 | 98.9% | 56.3% |
| 4935067 | 304.126.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C | 0.70 | 50.0 | 5.24e-01 | 74.5% | 87.1% |
| 5025196 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.70 | 51.0 | 5.48e-01 | 77.7% | 100.0% |
| 4945560 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.69 | 62.0 | 4.65e-01 | 98.9% | 62.2% |
| 4634052 | 304.16.1.1 ↗ | a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE | 0.69 | 51.0 | 5.23e-01 | 76.6% | 96.6% |
| 4622719 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.69 | 61.0 | 4.56e-01 | 98.9% | 61.8% |
| 4516880 | 304.8.1.74 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF26539 | 0.69 | 47.0 | 5.04e-01 | 70.2% | 92.5% |
| 3728896 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.69 | 61.0 | 4.43e-01 | 98.9% | 56.2% |
| 3267305 | 304.45.1.1 ↗ | a+b two layers › Alpha-beta plaits › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › HPPK | 0.68 | 60.0 | 4.91e-01 | 97.9% | 100.0% |
| 4018691 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.68 | 60.0 | 4.42e-01 | 98.9% | 56.9% |
| 4058622 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.68 | 48.0 | 3.48e-01 | 73.4% | 35.8% |
| 3463645 | 304.24.1.1 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C | 0.68 | 49.0 | 4.25e-01 | 75.5% | 50.0% |
| 4263302 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.68 | 60.0 | 4.42e-01 | 98.9% | 54.9% |
| 3728041 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.68 | 60.0 | 4.41e-01 | 98.9% | 55.0% |
| 4035986 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.68 | 59.0 | 4.45e-01 | 97.9% | 58.7% |
| 4562438 | 304.45.1.1 ↗ | a+b two layers › Alpha-beta plaits › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › HPPK | 0.68 | 59.0 | 4.95e-01 | 97.9% | 97.0% |
| 4521182 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.68 | 60.0 | 4.48e-01 | 98.9% | 60.4% |
| 4020643 | 304.8.1.1 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Thr_dehydrat_C | 0.68 | 53.0 | 5.29e-01 | 84.0% | 97.9% |
| 3185512 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.67 | 59.0 | 4.37e-01 | 98.9% | 57.7% |
| 4015784 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.67 | 60.0 | 4.36e-01 | 98.9% | 55.8% |
| 5050593 | 304.6.1.1 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C | 0.67 | 59.0 | 4.49e-01 | 98.9% | 60.0% |
| 3166724 | 304.24.1.1 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C | 0.67 | 48.0 | 4.24e-01 | 76.6% | 52.4% |
| 4333414 | 304.24.1.1 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C | 0.67 | 48.0 | 4.88e-01 | 76.6% | 79.8% |
| 4222843 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.66 | 59.0 | 4.23e-01 | 98.9% | 55.3% |
| 3583178 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.66 | 48.0 | 4.10e-01 | 76.6% | 47.7% |
| 3591484 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.66 | 47.0 | 4.85e-01 | 74.5% | 92.2% |
| 4309132 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.66 | 57.0 | 4.32e-01 | 98.9% | 58.3% |
| 3471441 | 304.24.1.1 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C | 0.66 | 47.0 | 4.45e-01 | 75.5% | 64.3% |
| 3706330 | 304.24.1.1 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C | 0.65 | 47.0 | 4.14e-01 | 75.5% | 52.1% |
| 4342843 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.65 | 56.0 | 4.23e-01 | 98.9% | 57.1% |
| 4018050 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.64 | 56.0 | 4.09e-01 | 98.9% | 55.8% |
| 4043242 | 304.6.1.5 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › Cytokin-bind | 0.64 | 56.0 | 4.21e-01 | 98.9% | 60.0% |
| 4990222 | 304.4.1.20 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg2 | 0.64 | 48.0 | 4.86e-01 | 80.9% | 82.1% |
| 4075488 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.64 | 57.0 | 4.12e-01 | 100.0% | 56.3% |
| 4016693 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.64 | 56.0 | 3.98e-01 | 100.0% | 47.9% |
| 3279556 | 304.6.1.5 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › Cytokin-bind | 0.64 | 55.0 | 4.09e-01 | 97.9% | 57.2% |
| 3599892 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.63 | 46.0 | 4.70e-01 | 76.6% | 81.1% |
| 3735140 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.63 | 54.0 | 4.00e-01 | 98.9% | 54.1% |
| 3808190 | 304.3.1.1 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA | 0.62 | 45.0 | 4.92e-01 | 75.5% | 94.7% |
| 4017525 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.62 | 55.0 | 4.00e-01 | 100.0% | 59.3% |
| 3784654 | 304.8.1.1 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Thr_dehydrat_C | 0.62 | 47.0 | 4.77e-01 | 81.9% | 88.3% |
| 5063605 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.62 | 46.0 | 3.16e-01 | 78.7% | 27.1% |
| 5061710 | 304.54.1.0 ↗ | a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like | 0.61 | 52.0 | 5.31e-01 | 97.9% | 97.8% |
| 5060043 | 304.126.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C | 0.61 | 43.0 | 4.57e-01 | 73.4% | 91.3% |
| 4956189 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.61 | 42.0 | 4.50e-01 | 72.3% | 98.8% |
| 4047925 | 304.4.1.4 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM | 0.61 | 46.0 | 4.33e-01 | 80.9% | 99.1% |
| 3809925 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.60 | 46.0 | 3.80e-01 | 81.9% | 74.3% |
| 5023017 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.60 | 48.0 | 3.75e-01 | 88.3% | 77.2% |
| 5081878 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.60 | 48.0 | 3.28e-01 | 89.4% | 94.4% |
| 4030156 | 304.9.1.9 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_2 | 0.59 | 51.0 | 4.67e-01 | 100.0% | 88.5% |
| 3800277 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.58 | 43.0 | 2.88e-01 | 78.7% | 97.2% |
| 3775096 | 382.1.1.2 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Toxin_TOLIP | 0.58 | 33.0 | 3.37e-01 | 78.7% | 56.7% |
| 3494762 | 886.1.1.0 ↗ | a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain | 0.55 | 46.0 | 3.96e-01 | 97.9% | 76.5% |
| 3398289 | 390.1.1.8 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_4 | 0.55 | 38.0 | 3.85e-01 | 98.9% | 71.6% |
| 5054484 | 304.11.1.0 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase | 0.53 | 37.0 | 4.11e-01 | 75.5% | 100.0% |
| 1886648 | 382.1.1.1 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 | 0.53 | 35.0 | 3.77e-01 | 94.7% | 82.9% |
| 5056359 | 886.1.1.2 ↗ | a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › GyrI-like | 0.50 | 42.0 | 3.70e-01 | 97.9% | 82.7% |
D2
high
residues 114-202
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2odmA00 | 1.10.287.750 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like | 0.75 | 32.0 | 3.42e-01 | 100.0% | 45.6% |
| 3nkyA03 | 1.20.960.20 | Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › | 0.64 | 34.0 | 3.69e-01 | 91.0% | 61.6% |
| 2fcwA00 | 1.20.81.10 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › RAP domain | 0.63 | 34.0 | 3.18e-01 | 96.6% | 42.5% |
| 5d18A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.59 | 44.0 | 3.47e-01 | 100.0% | 36.1% |
| 1l7vA00 | 1.10.3470.10 | Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC | 0.57 | 48.0 | 3.38e-01 | 98.9% | 78.9% |
| 2vmaA00 | 1.20.81.30 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F | 0.56 | 49.0 | 4.42e-01 | 97.8% | 91.8% |
| 3ddhA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.56 | 39.0 | 4.09e-01 | 74.2% | 91.4% |
| 2pkeA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.55 | 38.0 | 4.02e-01 | 73.0% | 89.7% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4962283 | 604.4.1.0 ↗ | alpha bundles › Spectrin repeat-like › Alpha-hemoglobin stabilizing protein AHSP › Alpha-hemoglobin stabilizing protein AHSP | 0.66 | 50.0 | 5.24e-01 | 80.9% | 91.3% |
| 3630289 | 101.1.1.331 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › PF27957 | 0.61 | 46.0 | 4.70e-01 | 82.0% | 98.8% |
| 3912871 | 4059.1.1.1 ↗ | a+b complex topology › Serpins › Serpins › Serpins › Serpin | 0.59 | 44.0 | 3.00e-01 | 82.0% | 95.0% |
| 3797607 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.57 | 45.0 | 4.58e-01 | 87.6% | 91.1% |
| 4940866 | 2.21.1.3 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 | 0.56 | 43.0 | 3.58e-01 | 84.3% | 53.5% |
| 5002913 | 2.21.1.3 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 | 0.55 | 43.0 | 3.57e-01 | 87.6% | 50.6% |
| 4420734 | 5065.1.1.2 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD | 0.53 | 46.0 | 3.26e-01 | 100.0% | 83.5% |
| 1252173 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.52 | 40.0 | 3.04e-01 | 86.5% | 51.4% |
| 3805926 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.52 | 34.0 | 3.48e-01 | 88.8% | 69.4% |
| 3547257 | 604.1.1.115 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PANTS-like | 0.51 | 29.0 | 3.24e-01 | 93.3% | 70.0% |
| 1226838 | 7579.1.1.3 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9 | 0.51 | 41.0 | 2.93e-01 | 86.5% | 61.9% |