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replication_associated_protein

Euk-Vir

Lake_Sarah-associated_circular_virus-16_Viruses.

replication_associated_protein__YP_009237530__Lake_Sarah-associated_circular_virus-16_Viruses.__X

Identity

Accession:
YP_009237530 ↗
Protein ID:
replication_associated_protein
Kingdom:
euk

Quality

76.1 mean pLDDT

Cluster

View cluster (114 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-107
PDB
D2 high residues 164-285
PDB
Domain cluster: rep: replication-associated_protein__YP_009001745__Dragonfly_larvae_associated_circular_virus-5_Viruses.__X__D171-266
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00910.29 best RNA_helicase 51.6 1.60e-13 73.0% 97.1%
D3 medium residues 117-155
PDB
Domain cluster: representative
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ezxA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.74 60.0 4.73e-01 94.9% 75.6%
2r0qC02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.72 59.0 5.33e-01 100.0% 67.3%
2x48A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.71 57.0 5.14e-01 89.7% 66.7%
5cz2G00 1.10.10.200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Integrase, N-terminal zinc-binding domain 0.70 53.0 5.34e-01 97.4% 90.2%
2bmuB00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.70 50.0 3.12e-01 79.5% 59.7%
1k78A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 59.0 4.99e-01 97.4% 57.6%
1r71A01 1.10.10.730 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › KorB DNA-binding domain 0.69 51.0 4.59e-01 82.1% 62.5%
1k6yA01 1.10.10.200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Integrase, N-terminal zinc-binding domain 0.69 56.0 5.43e-01 100.0% 87.0%
1gdtB03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.69 54.0 5.24e-01 89.7% 80.0%
1tc3C00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.68 54.0 5.02e-01 97.4% 70.6%
7s03A01 1.10.10.1450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.67 55.0 5.23e-01 100.0% 94.0%
3rmqA02 6.10.140.1650 Special › Helix non-globular › Helix Hairpins › 0.66 55.0 4.93e-01 94.9% 75.0%
3ol4A02 1.10.10.2390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.66 55.0 4.88e-01 100.0% 90.0%
4jrrB00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.65 48.0 3.14e-01 84.6% 98.9%
2cobA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 50.0 4.98e-01 100.0% 88.6%
5xsoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 52.0 4.33e-01 100.0% 60.5%
1owlA02 1.25.40.80 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.63 50.0 3.58e-01 92.3% 51.2%
2zxiA04 1.10.150.570 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › GidA associated domain, C-terminal subdomain 0.62 48.0 4.55e-01 97.4% 69.8%
1vquA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.62 53.0 4.49e-01 100.0% 70.1%
1p4wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 51.0 4.09e-01 100.0% 54.0%
2hpvA00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.62 53.0 3.34e-01 97.4% 33.3%
3oymA01 1.10.340.70 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › 0.61 48.0 3.89e-01 100.0% 49.5%
1uaaA02 1.10.10.160 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.61 49.0 4.13e-01 97.4% 52.7%
3b0pA02 1.20.120.1460 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.61 46.0 3.85e-01 87.2% 64.0%
1pbwB00 1.10.555.10 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein 0.60 50.0 3.23e-01 97.4% 19.5%
3idwA00 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.59 47.0 4.17e-01 100.0% 69.7%
4o1pD02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.59 47.0 2.97e-01 97.4% 43.5%
1pjrA02 1.10.10.160 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.59 45.0 3.99e-01 100.0% 54.2%
2p1oB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.58 44.0 4.48e-01 92.3% 100.0%
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 43.0 3.48e-01 84.6% 98.6%
1pzmA00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 44.0 3.01e-01 100.0% 30.0%
4p3yB00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 45.0 3.02e-01 100.0% 100.0%
3jamD02 3.30.1140.32 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain 0.50 36.0 2.75e-01 94.9% 69.9%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4165646 7000.1.1.0 ↗ alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.76 61.0 5.60e-01 100.0% 69.1%
4061833 2005.1.1.18 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.76 65.0 3.89e-01 97.4% 13.7%
4937703 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.75 54.0 5.61e-01 79.5% 100.0%
5030502 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 58.0 5.57e-01 89.7% 86.7%
3884353 101.1.2.381 ↗ alpha arrays › HTH › HTH › winged helix domain › UBR1-like_wing 0.73 58.0 4.14e-01 89.7% 82.6%
4212645 101.1.6.31 ↗ alpha arrays › HTH › HTH › TrpR › Phage_integrase 0.73 58.0 5.81e-01 89.7% 92.5%
3242226 101.1.2.381 ↗ alpha arrays › HTH › HTH › winged helix domain › UBR1-like_wing 0.72 58.0 4.26e-01 89.7% 87.6%
4334657 101.1.1.60 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.72 58.0 5.55e-01 89.7% 80.0%
4664976 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.71 58.0 3.56e-01 97.4% 16.7%
4952035 101.1.1.17 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.70 61.0 5.30e-01 100.0% 65.0%
3789627 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.70 60.0 5.06e-01 97.4% 58.5%
4008322 101.1.1.17 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.70 56.0 5.02e-01 89.7% 65.5%
3969487 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.70 59.0 5.56e-01 100.0% 95.9%
3619326 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.70 58.0 4.50e-01 100.0% 53.7%
4031830 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.69 58.0 5.40e-01 97.4% 82.0%
3589502 101.1.1.60 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.68 57.0 5.32e-01 100.0% 80.0%
3590732 101.1.1.364 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_49 0.66 55.0 5.31e-01 97.4% 84.4%
4019885 101.1.1.3 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.66 55.0 4.99e-01 97.4% 72.7%
3197445 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.66 54.0 4.95e-01 97.4% 72.7%
3904156 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.63 50.0 4.90e-01 97.4% 84.4%
4125191 3455.1.1.0 ↗ alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors 0.60 47.0 4.20e-01 100.0% 90.8%
3803894 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.60 46.0 4.01e-01 100.0% 53.3%