replication_associated_protein

Euk-Vir

Lake_Sarah-associated_circular_virus-40_Viruses.

replication_associated_protein__YP_009237538__Lake_Sarah-associated_circular_virus-40_Viruses.__X

Identity

70.1 mean pLDDT

View cluster (107 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-112

PDB

Domain cluster: rep: replication_associated_protein__YP_009237599__Lake_Sarah-associated_circular_molecule_10_Viruses.__X__D15-119

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02407.23 best	Viral_Rep	65.9	4.50e-18	91.5%	98.8%

D2 high residues 180-297

PDB

Domain cluster: rep: replication-associated_protein__YP_009001745__Dragonfly_larvae_associated_circular_virus-5_Viruses.__X__D171-266

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00910.29 best	RNA_helicase	37.9	3.10e-09	76.3%	81.9%

D3 medium residues 123-170

PDB

Domain cluster: representative

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2x2vA00	1.20.20.10	Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C	0.73	48.0	4.32e-01	75.0%	48.5%
2llkA01	1.10.10.60	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like	0.70	51.0	5.37e-01	79.2%	90.2%
2g2dA00	1.20.1200.10	Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like	0.66	47.0	3.35e-01	79.2%	23.7%
1z0pA00	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.60	45.0	3.95e-01	81.2%	56.2%
2pusA04	6.10.140.300	Special › Helix non-globular › Helix Hairpins ›	0.59	51.0	4.00e-01	100.0%	55.6%
4dkcB00	1.20.1250.80	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Interleukin-34	0.58	50.0	3.52e-01	100.0%	71.2%
1ku9A02	1.10.287.450	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin	0.57	43.0	3.92e-01	87.5%	60.9%
3fkjA02	1.10.10.2240	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.54	45.0	4.17e-01	100.0%	79.7%
3t5qG01	1.10.150.550	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Arenavirus nucleocapsid protein, head domain	0.52	40.0	3.14e-01	100.0%	39.4%
4ielA02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.51	42.0	3.32e-01	100.0%	69.8%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4961508	605.1.1.0 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase	0.68	48.0	4.15e-01	79.2%	48.0%
4965021	605.1.1.0 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase	0.68	47.0	4.52e-01	83.3%	63.6%
4587769	192.7.1.4 ↗	alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Val_tRNA-synt_C	0.67	51.0	4.56e-01	81.2%	61.5%
4503822	3922.1.1.67 ↗	alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Val_tRNA-synt_C	0.67	50.0	4.48e-01	81.2%	58.8%
4267024	605.1.1.1 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA	0.65	45.0	3.94e-01	81.2%	48.0%
5075066	633.21.1.0 ↗	alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107	0.57	43.0	3.54e-01	93.8%	81.8%