replication_associated_protein

Euk-Vir

Lake_Sarah-associated_circular_virus-2_Viruses.

replication_associated_protein__YP_009237554__Lake_Sarah-associated_circular_virus-2_Viruses.__X

Identity

88.4 mean pLDDT

View cluster (491 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 165-290

PDB

Domain cluster: rep: IMGVR_UViG_638276918_000001-638276918-638305645__D148-283

D2 medium residues 3-99

PDB

Domain cluster: rep: replication-associated_protein__YP_009553348__Odonata-associated_circular_virus-7_Viruses.__X__D5-106

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00799.27 best	Gemini_AL1	68.0	9.60e-19	100.0%	92.9%

D3 medium residues 108-147

PDB

Domain cluster: representative

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3lcnB00	1.10.340.40	Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain	0.64	53.0	4.13e-01	100.0%	44.3%
7z7vE01	1.10.10.1590	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E	0.63	48.0	4.45e-01	95.0%	81.7%
5my3A00	1.10.555.10	Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein	0.61	46.0	3.03e-01	92.5%	44.2%
1x4qA01	1.20.1390.10	Mainly Alpha › Up-down Bundle › PWI domain › PWI domain	0.60	45.0	4.04e-01	97.5%	57.7%
2x2vA00	1.20.20.10	Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C	0.57	41.0	3.60e-01	82.5%	48.5%
3o8jA02	1.10.230.10	Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2	0.57	44.0	3.54e-01	100.0%	93.9%
2b4lA02	3.10.105.10	Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3	0.54	41.0	2.95e-01	97.5%	49.0%
7crnA01	3.40.50.1820	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain	0.54	45.0	2.76e-01	95.0%	15.6%
1o1yA00	3.40.50.880	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain	0.54	41.0	2.70e-01	100.0%	42.2%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4252854	198.1.1.0 ↗	alpha arrays › Saposin-like › Saposin-like › Saposin-like	0.71	56.0	4.83e-01	100.0%	69.3%
344114	218.1.1.1 ↗	a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N	0.69	60.0	4.24e-01	100.0%	40.3%
3844496	592.1.1.12 ↗	alpha arrays › PWI domain-like › PWI domain › PWI domain › PP1_inhibitor	0.64	50.0	4.26e-01	100.0%	55.0%
3562237	4953.1.1.21 ↗	beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › PP1_inhibitor	0.64	49.0	4.19e-01	100.0%	55.0%
3537229	310.3.1.21 ↗	a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › HNOB	0.63	51.0	3.92e-01	100.0%	69.5%
3675053	2004.1.1.94 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP_bind_1	0.59	46.0	3.17e-01	95.0%	42.9%
3970291	101.1.1.217 ↗	alpha arrays › HTH › HTH › Three-helical HTH › RsmI_C	0.58	44.0	4.39e-01	100.0%	88.9%
4173843	532.2.1.1 ↗	alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains › HrpJ	0.58	48.0	3.63e-01	100.0%	58.2%