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replication_associated_protein
Euk-VirLake_Sarah-associated_circular_virus-26_Viruses.
replication_associated_protein__YP_009237563__Lake_Sarah-associated_circular_virus-26_Viruses.__X
Identity
- Accession:
- YP_009237563 ↗
- Protein ID:
- replication_associated_protein
- Kingdom:
- euk
Quality
84.6
mean pLDDT
Cluster
View cluster (491 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-100
Domain cluster:
rep: replication-associated_protein__YP_009553348__Odonata-associated_circular_virus-7_Viruses.__X__D5-106
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00799.27 best | Gemini_AL1 | 71.7 | 7.00e-20 | 99.0% | 87.6% |
D2
high
residues 170-302
Domain cluster:
rep: IMGVR_UViG_638276918_000001-638276918-638305645__D148-283
D3
medium
residues 111-151
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3g2eB00 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.67 | 53.0 | 3.58e-01 | 97.6% | 87.6% |
| 3on3B00 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.67 | 52.0 | 3.58e-01 | 95.1% | 86.9% |
| 2wgmA01 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.64 | 46.0 | 3.77e-01 | 82.9% | 39.0% |
| 2wn5A01 | 3.90.176.10 | Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 | 0.63 | 42.0 | 2.76e-01 | 70.7% | 22.7% |
| 2lmzA00 | 1.10.10.2920 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.62 | 44.0 | 4.47e-01 | 90.2% | 81.0% |
| 2yjgA01 | 3.90.226.30 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › LarA, C-terminal domain | 0.57 | 49.0 | 3.19e-01 | 97.6% | 25.4% |
| 2vqxA02 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.56 | 44.0 | 3.09e-01 | 97.6% | 92.2% |
| 2r31A02 | 1.10.3580.10 | Mainly Alpha › Orthogonal Bundle › ATP12-like fold › ATP12 ATPase | 0.56 | 40.0 | 2.72e-01 | 80.5% | 39.4% |
| 1vb3A01 | 3.90.1380.10 | Alpha Beta › Alpha-Beta Complex › threonine synthase, domain 1, chain A › Threonine synthase, N-terminal domain | 0.54 | 44.0 | 3.68e-01 | 100.0% | 77.8% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4939370 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 54.0 | 4.26e-01 | 100.0% | 65.0% |
| 5050989 | 2003.1.1.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short | 0.67 | 55.0 | 3.34e-01 | 100.0% | 14.7% |
| 3480146 | 101.1.2.178 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_61 | 0.66 | 54.0 | 4.11e-01 | 100.0% | 73.6% |
| 3970291 | 101.1.1.217 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › RsmI_C | 0.62 | 47.0 | 4.64e-01 | 100.0% | 86.7% |
| 4173843 | 532.2.1.1 ↗ | alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains › HrpJ | 0.60 | 50.0 | 3.74e-01 | 95.1% | 59.1% |