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replication_associated_protein

Euk-Vir

Lake_Sarah-associated_circular_virus-28_Viruses.

replication_associated_protein__YP_009237567__Lake_Sarah-associated_circular_virus-28_Viruses.__X

Identity

Accession:
YP_009237567 ↗
Protein ID:
replication_associated_protein
Kingdom:
euk

Quality

87.0 mean pLDDT

Cluster

View cluster (111 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 23-113
PDB
Domain cluster: rep: replication_associated_protein__YP_009237599__Lake_Sarah-associated_circular_molecule_10_Viruses.__X__D15-119
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02407.23 best Viral_Rep 55.8 6.10e-15 92.3% 96.3%
D2 high residues 123-169
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1d3yA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 64.0 5.65e-01 100.0% 85.9%
2pg4A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 62.0 5.08e-01 100.0% 71.4%
3biqA02 3.90.230.10 Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily 0.65 56.0 3.49e-01 100.0% 42.0%
4bpxD00 1.20.930.80 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.64 55.0 3.58e-01 97.9% 69.0%
4dloB02 1.25.40.610 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.64 55.0 4.21e-01 100.0% 57.3%
4wqkA00 3.30.460.40 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.64 54.0 3.66e-01 95.7% 67.4%
6oinA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 52.0 4.78e-01 100.0% 82.1%
1vw4L02 1.10.246.170 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.63 52.0 4.30e-01 93.6% 71.8%
1ybzA00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.62 52.0 4.56e-01 100.0% 68.4%
2e2oA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.62 51.0 3.58e-01 97.9% 76.2%
1efpB00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.62 51.0 3.28e-01 97.9% 18.3%
3w0lD02 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.62 49.0 3.06e-01 100.0% 62.0%
3vmmA01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.60 45.0 3.36e-01 97.9% 30.4%
3crvA03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 46.0 3.09e-01 89.4% 21.3%
3k3oA02 1.20.58.1360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 52.0 4.29e-01 100.0% 84.5%
3dfgA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 47.0 4.70e-01 97.9% 100.0%
1zc6A02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.58 47.0 3.38e-01 97.9% 28.8%
1y74A00 1.10.287.650 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › L27 domain 0.58 41.0 3.91e-01 76.6% 77.2%
2janA02 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.56 44.0 3.56e-01 91.5% 75.2%
3c1dA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 43.0 4.40e-01 91.5% 100.0%
2pbiA02 1.10.1240.60 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.55 45.0 3.66e-01 100.0% 49.5%
1sv0D00 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.55 45.0 3.89e-01 100.0% 65.4%
2ra1A03 1.20.58.770 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 43.0 4.02e-01 100.0% 87.3%
3hjlA03 1.20.5.2020 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.53 40.0 4.23e-01 100.0% 100.0%
3fseA01 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.52 42.0 2.80e-01 93.6% 21.8%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4269306 101.1.1.287 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PF28388 0.88 74.0 7.29e-01 100.0% 88.0%
3864533 101.1.6.20 ↗ alpha arrays › HTH › HTH › TrpR › PF28388 0.87 74.0 7.00e-01 100.0% 80.0%
4168631 101.1.6.20 ↗ alpha arrays › HTH › HTH › TrpR › PF28388 0.85 71.0 6.98e-01 100.0% 88.0%
3882191 101.1.2.639 ↗ alpha arrays › HTH › HTH › winged helix domain › PF28388 0.82 70.0 7.16e-01 100.0% 100.0%
3180777 101.1.1.21 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.79 68.0 5.99e-01 97.9% 87.1%
3622919 101.1.1.21 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.79 70.0 5.85e-01 100.0% 78.8%
3567088 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.77 68.0 5.84e-01 100.0% 89.3%
3543711 101.1.2.24 ↗ alpha arrays › HTH › HTH › winged helix domain › MAGE 0.76 67.0 5.51e-01 100.0% 80.0%
3587350 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 57.0 5.69e-01 100.0% 86.0%
4935180 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.73 64.0 5.03e-01 100.0% 73.0%
3233890 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.73 62.0 5.60e-01 100.0% 69.2%
4240820 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.73 61.0 4.56e-01 100.0% 46.5%
3965373 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.72 57.0 4.96e-01 91.5% 58.6%
4940432 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 61.0 4.99e-01 100.0% 78.9%
3595890 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.70 60.0 4.10e-01 100.0% 66.3%
5002559 2.21.1.0 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.70 59.0 4.12e-01 100.0% 32.1%
3594233 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.69 47.0 2.96e-01 100.0% 14.2%
3574922 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 55.0 5.05e-01 100.0% 81.5%
3896790 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 55.0 4.84e-01 100.0% 69.3%
3640877 101.1.2.627 ↗ alpha arrays › HTH › HTH › winged helix domain › Ovate 0.65 56.0 5.35e-01 100.0% 96.4%
3663947 101.35.1.23 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › Ovate 0.64 51.0 5.00e-01 97.9% 100.0%
3605439 192.4.1.0 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.64 54.0 4.78e-01 97.9% 77.1%
3348187 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.64 53.0 3.35e-01 100.0% 29.1%
5065022 2008.1.1.85 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_TdeIII 0.64 52.0 3.51e-01 100.0% 95.3%
5072661 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 52.0 4.53e-01 100.0% 76.2%
3801978 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.64 51.0 3.82e-01 97.9% 34.1%
3423402 604.7.1.1 ↗ alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA 0.63 45.0 3.74e-01 76.6% 69.4%
3321490 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.63 51.0 3.04e-01 100.0% 19.3%
3944250 7516.1.1.2 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.62 54.0 3.40e-01 100.0% 27.5%
3362122 2004.1.1.44 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PRK 0.62 51.0 3.36e-01 100.0% 48.7%
4137277 4336.1.1.1 ↗ alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › Com_YlbF 0.59 47.0 3.57e-01 89.4% 45.2%
3577543 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.59 51.0 4.52e-01 100.0% 80.0%
4933155 198.1.1.27 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › PF27234 0.58 50.0 4.18e-01 100.0% 61.2%
3250375 192.1.1.0 ↗ alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain 0.54 42.0 3.61e-01 85.1% 84.0%
D3 high residues 183-315
PDB
Domain cluster: rep: MN062720.1__QDP45567.1__SEA_FUZZBUSTER_83__00083__D568-722_747-764