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replication_associated_protein

Euk-Vir

Lake_Sarah-associated_circular_virus-42_Viruses.

replication_associated_protein__YP_009237578__Lake_Sarah-associated_circular_virus-42_Viruses.__X

Identity

Accession:
YP_009237578 ↗
Protein ID:
replication_associated_protein
Kingdom:
euk

Quality

83.0 mean pLDDT

Cluster

View cluster (107 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-116
PDB
Domain cluster: rep: replication-associated_protein__YP_009551390__Fly_associated_circular_virus_6__2293286__D5-105
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02407.23 best Viral_Rep 44.2 2.60e-11 89.5% 96.3%
D2 high residues 178-306
PDB
Domain cluster: rep: replication_associated_protein__YP_009345107__Amphibola_crenata_associated_bacilladnavirus_1__1941435__D302-478
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00910.29 best RNA_helicase 39.6 9.20e-10 72.9% 99.1%
D3 medium residues 125-169
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1y0uA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 63.0 5.01e-01 91.1% 60.7%
1qdmA03 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.75 62.0 5.31e-01 97.8% 62.3%
3ulqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 60.0 5.56e-01 93.3% 87.9%
1a04A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 59.0 4.97e-01 95.6% 63.7%
1lp1A00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.70 47.0 4.37e-01 75.6% 56.4%
1p4wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 50.0 4.19e-01 93.3% 58.6%
6vvoC03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.62 50.0 4.11e-01 95.6% 56.0%
2dsjA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.61 51.0 4.56e-01 97.8% 77.6%
2js5A00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.60 44.0 3.85e-01 84.4% 50.7%
3ne5B04 6.10.140.730 Special › Helix non-globular › Helix Hairpins › 0.57 44.0 4.31e-01 93.3% 94.1%
2lhjA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.57 46.0 3.98e-01 97.8% 88.7%
3zbhA00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.57 40.0 3.37e-01 80.0% 44.4%
3czpB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 45.0 2.95e-01 91.1% 29.6%
2mpkA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.56 46.0 4.07e-01 100.0% 94.6%
1x0tA01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.55 39.0 3.66e-01 80.0% 60.7%
3fkjA02 1.10.10.2240 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.54 44.0 4.08e-01 100.0% 78.1%
3kzxA02 1.10.150.730 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.51 41.0 3.80e-01 95.6% 67.7%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4071215 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.78 67.0 6.37e-01 100.0% 83.6%
3514120 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.76 65.0 5.96e-01 100.0% 73.3%
4281782 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.75 63.0 5.43e-01 100.0% 61.3%
3931388 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 61.0 5.86e-01 100.0% 94.5%
4224167 7000.1.1.0 ↗ alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.73 58.0 5.29e-01 88.9% 76.7%
3286659 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.73 59.0 5.18e-01 93.3% 81.4%
4173465 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.71 58.0 5.51e-01 100.0% 78.2%
3280314 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.71 60.0 5.65e-01 95.6% 85.5%
4608916 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.71 60.0 5.67e-01 100.0% 85.5%
1695424 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.71 56.0 4.90e-01 100.0% 58.6%
4153644 7000.1.1.0 ↗ alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.67 54.0 5.03e-01 97.8% 81.7%
5010328 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.66 51.0 4.91e-01 91.1% 81.8%
5043888 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.65 49.0 4.49e-01 88.9% 76.9%
5074415 2004.1.3.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.64 52.0 3.58e-01 100.0% 91.4%
4156355 195.1.1.1 ↗ alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.62 49.0 3.55e-01 100.0% 52.5%
5056170 2005.1.1.13 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like 0.60 48.0 3.42e-01 97.8% 95.2%
3968817 3831.1.1.1 ↗ alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › LprI 0.60 43.0 3.49e-01 75.6% 40.0%
2035701 614.1.1.1 ↗ alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain › L27 0.60 44.0 4.03e-01 80.0% 83.9%
5001590 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.60 47.0 4.53e-01 97.8% 92.7%
3302252 3826.1.1.0 ↗ alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) 0.50 41.0 3.68e-01 93.3% 80.0%