replication_associated_protein

Euk-Vir

Lake_Sarah-associated_circular_virus-43_Viruses.

replication_associated_protein__YP_009237581__Lake_Sarah-associated_circular_virus-43_Viruses.__X

Identity

81.4 mean pLDDT

View cluster (107 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-112

PDB

Domain cluster: rep: replication_associated_protein__YP_009237599__Lake_Sarah-associated_circular_molecule_10_Viruses.__X__D15-119

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02407.23 best	Viral_Rep	40.9	2.80e-10	80.2%	100.0%

D2 high residues 170-288

PDB

Domain cluster: rep: replication-associated_protein__YP_009001745__Dragonfly_larvae_associated_circular_virus-5_Viruses.__X__D171-266

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00910.29 best	RNA_helicase	32.5	1.40e-07	74.8%	81.9%

D3 medium residues 119-159

PDB

Domain cluster: representative

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3d5lA02	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.68	52.0	5.12e-01	92.7%	100.0%
2janA02	1.10.240.10	Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase	0.58	41.0	3.34e-01	87.8%	74.3%
1x0tA01	1.20.5.420	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C	0.52	36.0	3.25e-01	78.0%	50.8%
2wwwC01	1.20.5.170	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.51	41.0	3.92e-01	100.0%	96.2%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4947757	2005.1.1.4 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase	0.56	42.0	2.70e-01	100.0%	65.9%