←Back to structures

replication_associated_protein

Euk-Vir

Lake_Sarah-associated_circular_virus-45_Viruses.

replication_associated_protein__YP_009237598__Lake_Sarah-associated_circular_virus-45_Viruses.__X

Identity

Accession:
YP_009237598 ↗
Protein ID:
replication_associated_protein
Kingdom:
euk

Quality

87.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-98
PDB
Domain cluster: rep: replication-associated_protein__YP_009552054__Stipagrostis_associaed_virus_Viruses.__X__D4-105
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00799.27 best Gemini_AL1 57.9 1.30e-15 100.0% 90.3%
D2 high residues 102-148
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3d5lB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 52.0 4.10e-01 76.6% 40.2%
2w7nA00 1.10.10.2690 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.73 52.0 4.21e-01 78.7% 41.5%
3dteA02 1.10.10.1030 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › IrrE, HTH domain 0.71 49.0 5.18e-01 74.5% 97.6%
3tgnB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 50.0 4.62e-01 76.6% 60.3%
1rr7A02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.70 49.0 4.94e-01 76.6% 75.0%
3h4cA02 1.10.472.110 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › 0.70 58.0 4.55e-01 100.0% 70.0%
2pmyA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.69 55.0 4.67e-01 87.2% 54.8%
2ld5A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.68 49.0 4.45e-01 78.7% 65.7%
1mkmB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 48.0 4.15e-01 78.7% 53.9%
1e3oC02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.66 47.0 4.70e-01 78.7% 83.3%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.66 46.0 4.07e-01 78.7% 55.1%
3wrbB02 1.10.700.10 Mainly Alpha › Orthogonal Bundle › Protocatechuate 4,5-dioxygenase; Chain A › Dioxygenase LigAB, LigA subunit 0.65 56.0 4.33e-01 100.0% 67.3%
2kt0A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.65 48.0 4.83e-01 83.0% 91.5%
1x2mA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.65 48.0 4.66e-01 85.1% 83.3%
1t0fA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 45.0 3.63e-01 74.5% 43.4%
2da3A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 46.0 4.66e-01 80.9% 87.2%
1z7mC00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.63 45.0 2.81e-01 78.7% 29.5%
2da7A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.63 45.0 4.09e-01 80.9% 59.2%
4kb2A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.61 45.0 3.52e-01 80.9% 82.6%
2odmA00 1.10.287.750 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like 0.61 45.0 3.88e-01 83.0% 79.7%
2riqA01 1.10.20.130 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › 0.60 41.0 3.72e-01 72.3% 60.6%
1qd1B02 3.30.70.670 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Formiminotransferase, C-terminal subdomain 0.60 47.0 3.33e-01 87.2% 57.2%
2nn4A00 1.10.287.760 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like 0.60 41.0 3.85e-01 74.5% 91.9%
1f5qB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.58 44.0 3.44e-01 97.9% 80.4%
2mgqA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.57 40.0 3.73e-01 80.9% 66.2%
1oxjA01 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.57 40.0 3.78e-01 83.0% 60.7%
1vhxB00 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.55 43.0 3.26e-01 95.7% 52.9%
2rldA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.55 43.0 3.31e-01 89.4% 57.9%
3lupA01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 45.0 3.07e-01 100.0% 87.7%
3bm1A00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.50 38.0 2.73e-01 93.6% 44.1%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5068868 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.88 60.0 6.47e-01 72.3% 95.0%
5030241 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.86 63.0 5.83e-01 78.7% 68.3%
3598243 592.1.1.0 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain 0.79 60.0 5.40e-01 83.0% 60.0%
4392311 101.35.1.1 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 0.79 56.0 5.75e-01 76.6% 88.9%
4997092 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.78 67.0 5.94e-01 100.0% 70.0%
4073499 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.77 55.0 5.81e-01 76.6% 95.0%
4470343 3919.1.1.2 ↗ alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN 0.75 63.0 4.62e-01 93.6% 86.7%
3248700 3919.1.1.2 ↗ alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN 0.73 54.0 4.21e-01 83.0% 89.1%
5042947 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.73 53.0 5.23e-01 76.6% 74.0%
3349555 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.73 53.0 5.45e-01 78.7% 95.6%
3970951 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 51.0 5.03e-01 78.7% 74.0%
4258153 101.1.1.43 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Mor 0.70 50.0 4.86e-01 78.7% 67.3%
2556 101.1.1.43 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Mor 0.70 49.0 4.94e-01 76.6% 75.0%
3297949 592.7.1.2 ↗ alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain › PWI 0.70 50.0 4.59e-01 78.7% 61.5%
4114979 2002.1.1.71 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › SOR_SNZ 0.70 50.0 3.06e-01 80.9% 12.3%
3847014 3919.1.1.2 ↗ alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN 0.68 58.0 4.43e-01 100.0% 88.7%
5002775 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.68 47.0 5.00e-01 74.5% 87.5%
3586125 592.5.1.0 ↗ alpha arrays › PWI domain-like › 1-Cys type selenoprotein methionine sulfoxide reductase A helical domain › 1-Cys type selenoprotein methionine sulfoxide reductase A helical domain 0.67 51.0 4.90e-01 85.1% 76.4%
5053841 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 47.0 4.10e-01 76.6% 53.3%
4949368 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 47.0 4.55e-01 78.7% 83.6%
3477766 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.66 47.0 3.99e-01 78.7% 67.1%
3222238 101.1.2.649 ↗ alpha arrays › HTH › HTH › winged helix domain › PF28730 0.66 46.0 4.12e-01 76.6% 78.6%
3596754 101.7.1.0 ↗ alpha arrays › HTH › DEK-C › DEK-C 0.65 46.0 4.21e-01 76.6% 78.5%
1873749 101.29.1.0 ↗ alpha arrays › HTH › helical bundles in heme iron utilization protein-like › helical bundles in heme iron utilization protein-like 0.62 43.0 4.35e-01 74.5% 80.0%
3721864 616.1.1.0 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain 0.62 36.0 3.24e-01 72.3% 41.5%
4987624 102.1.1.119 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DUF4332 0.62 46.0 4.10e-01 91.5% 54.7%
3970774 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.61 52.0 3.58e-01 100.0% 69.1%
3485420 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.61 43.0 4.10e-01 80.9% 68.3%
3788129 284.1.3.1 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 0.59 41.0 3.65e-01 76.6% 66.7%
4016111 604.9.1.0 ↗ alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 0.55 41.0 3.60e-01 80.9% 81.3%
3623778 3444.1.1.1 ↗ alpha arrays › DP domain › DP domain › DP domain › STI1-HOP_DP 0.55 40.0 3.78e-01 83.0% 63.3%
3481629 3444.1.1.2 ↗ alpha arrays › DP domain › DP domain › DP domain › ZNHIT3_C 0.55 39.0 3.47e-01 76.6% 51.4%
3929364 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.50 35.0 2.75e-01 78.7% 63.2%
D3 high residues 154-290
PDB
Domain cluster: rep: MN062720.1__QDP45567.1__SEA_FUZZBUSTER_83__00083__D568-722_747-764