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replication_associated_protein

Euk-Vir

Sheep_faeces_associated_smacovirus_3

replication_associated_protein__YP_009252308__Sheep_faeces_associated_smacovirus_3__1843758

Identity

Accession:
YP_009252308 ↗
Protein ID:
replication_associated_protein
Kingdom:
euk

Quality

88.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-91
PDB
Domain cluster: representative
CATH (58)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6h8oA00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.77 66.0 6.47e-01 91.1% 89.5%
2lqjA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.76 57.0 5.68e-01 78.9% 86.2%
1m55A00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.76 68.0 5.31e-01 100.0% 89.1%
3p96A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.76 53.0 5.51e-01 73.3% 91.7%
1z1dB00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.74 63.0 5.59e-01 93.3% 69.5%
3nrbB01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.74 52.0 5.43e-01 73.3% 89.2%
1f08B00 3.40.1310.10 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.74 63.0 5.34e-01 92.2% 67.6%
3m05B01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.73 52.0 5.20e-01 73.3% 93.5%
1l2mA00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.73 62.0 5.67e-01 92.2% 84.7%
2bvfA03 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.73 66.0 5.00e-01 100.0% 96.2%
1u8sA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.73 52.0 5.34e-01 74.4% 90.5%
2dt9A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.73 50.0 5.34e-01 72.2% 92.4%
1zpvA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.73 52.0 5.38e-01 75.6% 90.6%
2x3gA00 3.30.70.1910 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.72 57.0 5.29e-01 85.6% 79.3%
3d3bJ00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.72 50.0 5.08e-01 71.1% 86.2%
1sc6A03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.72 49.0 5.11e-01 70.0% 84.1%
2bj3D02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.72 50.0 5.25e-01 72.2% 87.7%
4djbA00 3.30.70.2870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Mastadenovirus E4 ORF3 0.72 52.0 4.75e-01 75.6% 93.2%
3w7bA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.72 50.0 5.13e-01 73.3% 88.6%
2nyiA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.72 51.0 5.31e-01 73.3% 91.4%
3n0vA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.71 50.0 5.18e-01 73.3% 89.3%
1r9wA00 3.40.1310.10 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.71 60.0 5.17e-01 91.1% 70.3%
1ygyA04 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.71 50.0 5.38e-01 74.4% 93.4%
6lxgA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.71 49.0 5.27e-01 71.1% 98.6%
5is2A01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.71 55.0 5.48e-01 82.2% 93.4%
2raqA01 3.30.70.1340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MTH889-like domain 0.70 49.0 5.08e-01 73.3% 85.9%
5fiiB00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.70 49.0 5.20e-01 73.3% 93.6%
2kjwA00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.70 49.0 4.82e-01 73.3% 80.2%
2yvsA02 3.30.70.2560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.69 42.0 4.93e-01 71.1% 91.5%
3mwbB03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.69 50.0 4.91e-01 75.6% 81.1%
3ibwA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.67 47.0 4.96e-01 73.3% 89.9%
6lpnA04 3.30.70.2740 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 45.0 4.51e-01 70.0% 84.2%
1q5yC00 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.67 47.0 4.85e-01 72.2% 89.0%
2rrnA01 3.30.70.2040 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 46.0 4.81e-01 73.3% 91.6%
1pbuA00 3.30.70.1010 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Translation elongation factor EF1B, gamma chain, conserved domain 0.66 55.0 4.55e-01 91.1% 70.4%
2jheA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.66 49.0 5.15e-01 82.2% 88.9%
1u8sA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.63 50.0 5.15e-01 91.1% 90.7%
4pg4B03 3.30.70.3100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 45.0 4.79e-01 75.6% 90.7%
3v2uC02 3.30.70.3170 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 43.0 4.25e-01 72.2% 89.5%
2go8A01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 44.0 4.78e-01 75.6% 91.9%
4dmzA02 3.30.70.2880 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 48.0 4.23e-01 86.7% 78.8%
3vteA03 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.59 52.0 4.17e-01 100.0% 80.5%
2if1A00 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.59 41.0 3.68e-01 72.2% 53.2%
4ud8A03 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.59 52.0 4.15e-01 100.0% 79.9%
3nlcA01 3.30.70.2700 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 40.0 4.31e-01 71.1% 97.4%
3zoqC00 6.20.250.30 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.58 29.0 3.60e-01 73.3% 79.2%
5d79A03 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.57 49.0 3.98e-01 100.0% 78.6%
5chtB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.56 46.0 3.24e-01 90.0% 97.7%
4za1C00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 40.0 4.03e-01 76.7% 91.3%
5cvmA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.55 44.0 3.15e-01 90.0% 98.1%
1yg9A01 2.60.40.1960 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 38.0 4.14e-01 97.8% 90.5%
1amuA04 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.53 45.0 4.44e-01 96.7% 90.6%
3lurA00 3.20.80.10 Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain 0.53 44.0 3.81e-01 97.8% 87.3%
4gs5A02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.53 45.0 4.33e-01 97.8% 85.7%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.52 27.0 3.05e-01 76.7% 65.2%
2l03A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.52 35.0 3.74e-01 92.2% 85.1%
2oikA00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.50 37.0 3.28e-01 80.0% 54.7%
3i24B00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.50 37.0 3.27e-01 80.0% 54.7%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3926520 304.8.1.23 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Helitron_like_N 0.79 66.0 5.15e-01 90.0% 85.3%
3377701 304.8.1.23 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Helitron_like_N 0.79 68.0 5.11e-01 93.3% 87.1%
5044954 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.79 54.0 5.73e-01 71.1% 93.8%
3344616 304.8.1.64 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Helitron_like_N, REP_ORF2-G2P 0.79 70.0 5.31e-01 96.7% 85.4%
3937809 304.55.1.15 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Helitron_like_N 0.77 68.0 5.33e-01 96.7% 87.8%
4133039 304.8.1.81 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › REP_ORF2-G2P 0.77 64.0 5.19e-01 90.0% 83.0%
3988189 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.76 55.0 5.81e-01 75.6% 91.3%
4948792 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.76 52.0 5.62e-01 71.1% 98.7%
3164326 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.75 51.0 5.63e-01 70.0% 98.6%
5051000 304.8.1.4 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C 0.75 53.0 5.50e-01 73.3% 84.3%
4959045 304.8.1.81 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › REP_ORF2-G2P 0.75 63.0 5.34e-01 93.3% 79.3%
4402979 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.74 50.0 5.43e-01 70.0% 93.3%
4886188 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.74 52.0 5.44e-01 72.2% 95.0%
1698645 304.6.1.3 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.73 66.0 4.78e-01 100.0% 81.0%
4599086 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.73 51.0 5.17e-01 72.2% 85.4%
3372782 304.8.1.64 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Helitron_like_N, REP_ORF2-G2P 0.73 64.0 4.78e-01 93.3% 77.1%
5005586 304.8.1.9 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_6 0.73 53.0 5.50e-01 76.7% 89.4%
4886051 304.8.1.8 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 0.73 51.0 5.37e-01 72.2% 95.0%
5017055 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.73 50.0 5.39e-01 71.1% 93.3%
3838547 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.73 51.0 5.36e-01 72.2% 88.6%
5004030 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.73 54.0 5.30e-01 77.8% 84.2%
4953681 304.8.1.8 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 0.73 53.0 5.63e-01 76.7% 91.3%
4954911 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.73 51.0 5.26e-01 73.3% 88.2%
4186587 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.73 50.0 5.25e-01 71.1% 92.5%
4504111 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.72 53.0 5.54e-01 76.7% 91.3%
4977203 304.8.1.8 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 0.72 51.0 5.19e-01 75.6% 81.1%
162851 304.8.1.9 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_6 0.72 51.0 5.31e-01 73.3% 91.4%
139586 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.71 50.0 5.20e-01 73.3% 90.4%
4647496 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.71 48.0 5.20e-01 70.0% 96.0%
4944633 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.71 49.0 5.26e-01 72.2% 92.0%
5065805 304.8.1.22 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › AHAS-like_ACT 0.71 54.0 5.51e-01 81.1% 91.8%
3970195 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.70 51.0 5.04e-01 76.7% 82.1%
3721769 304.8.1.22 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › AHAS-like_ACT 0.70 51.0 4.96e-01 76.7% 74.0%
4043242 304.6.1.5 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › Cytokin-bind 0.70 62.0 4.59e-01 100.0% 82.1%
4993405 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.69 50.0 5.36e-01 76.7% 96.0%
4006594 304.8.1.8 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 0.69 50.0 5.16e-01 76.7% 88.1%
3958901 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.69 48.0 4.89e-01 72.2% 83.5%
4994637 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.68 47.0 4.62e-01 73.3% 74.0%
4938054 304.28.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.67 46.0 4.86e-01 72.2% 90.0%
3496728 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.65 49.0 4.90e-01 78.9% 80.0%
5056226 304.126.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C 0.65 44.0 4.80e-01 70.0% 90.0%
4988829 304.110.1.1 a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › Acylphosphatase 0.64 58.0 5.46e-01 100.0% 89.1%
3464795 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.64 56.0 5.15e-01 98.9% 81.7%
3342333 304.28.1.10 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › Helitron_like_N 0.64 55.0 4.34e-01 93.3% 69.7%
3357573 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.61 53.0 4.99e-01 96.7% 92.7%
4473190 304.8.1.53 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › GlnD_5th 0.53 47.0 3.82e-01 100.0% 56.0%
4234527 2006.1.1.11 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase_3 0.53 43.0 3.19e-01 93.3% 53.0%
4959304 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.53 46.0 4.19e-01 97.8% 95.8%
4667615 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.51 45.0 4.07e-01 98.9% 79.2%
D2 high residues 97-239
PDB