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replication_associated_protein

Euk-Vir

Faeces_associated_gemycircularvirus_18

replication_associated_protein__YP_009252359__Faeces_associated_gemycircularvirus_18__1843738

Identity

Accession:: YP_009252359 ↗
Protein ID:: replication_associated_protein
Kingdom:: euk

Quality

88.3 mean pLDDT

Taxonomy

Shotokuvirae› Cressdnaviricota› Repensiviricetes› Geplafuvirales› Genomoviridae› Gemycircularvirus› Faeces_associated_gemycircularvirus_18

TaxID: 1843738

Cluster

View cluster (491 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-101

PDB

Domain cluster: rep: replication-associated_protein__YP_009552054__Stipagrostis_associaed_virus_Viruses.__X__D4-105

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00799.27 best	Gemini_AL1	31.9	1.60e-07	100.0%	89.4%

D2 high residues 117-157

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF08283.17 best	Gemini_AL1_M	28.2	2.30e-06	100.0%	38.3%

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5x68A00	3.50.50.60	Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain	0.69	58.0	3.40e-01	100.0%	16.7%
1vtnC00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.64	51.0	4.04e-01	100.0%	52.0%
1xx7A00	1.10.3210.10	Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432	0.61	50.0	3.36e-01	95.1%	66.9%
1bqbA02	1.10.390.10	Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2	0.61	50.0	3.58e-01	100.0%	36.8%
4ga0A00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.60	48.0	3.41e-01	95.1%	32.2%
1gkrA02	3.20.20.140	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases	0.58	48.0	2.86e-01	100.0%	22.5%
5iaiA02	3.40.190.10	Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II	0.55	44.0	2.92e-01	100.0%	67.1%
5fgmA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.53	41.0	3.61e-01	90.2%	55.4%
2xepB01	3.10.450.280	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.52	43.0	3.26e-01	100.0%	36.8%
2yv4A00	3.40.50.11030	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Threonylcarbamoyl-AMP synthase, C-terminal domain	0.51	41.0	3.27e-01	97.6%	79.4%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3719708	378.1.1.2 ↗	few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH	0.71	57.0	4.24e-01	97.6%	33.9%
3526457	605.4.1.0 ↗	alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein	0.66	56.0	4.59e-01	100.0%	77.5%
3719792	4030.1.1.0 ↗	alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz	0.62	54.0	4.77e-01	100.0%	86.7%
4173843	532.2.1.1 ↗	alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains › HrpJ	0.58	45.0	3.55e-01	100.0%	81.8%

D3 high residues 170-336

PDB

Domain cluster: rep: IMGVR_UViG_638276918_000001-638276918-638305645__D148-283