replication_associated_protein

Euk-Vir

Amphibola_crenata_associated_bacilladnavirus_2

replication_associated_protein__YP_009345086__Amphibola_crenata_associated_bacilladnavirus_2__1941436

Identity

70.0 mean pLDDT

Shotokuvirae› Cressdnaviricota› Arfiviricetes› Baphyvirales› Bacilladnaviridae› Protobacilladnavirus› Amphibola_crenata_associated_bacilladnavirus_2

TaxID: 1941436

View cluster (4 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 128-258

PDB

Domain cluster: rep: replication_associated_protein__YP_009237599__Lake_Sarah-associated_circular_molecule_10_Viruses.__X__D15-119

D2 high residues 268-317

PDB

Domain cluster: representative

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2km6A00	1.10.533.10	Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas	0.63	42.0	3.41e-01	70.0%	93.8%
3zq5A03	3.30.450.270	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain	0.61	48.0	3.64e-01	100.0%	93.5%
5u1xA01	1.10.287.940	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › atp-gated p2x4 ion channel	0.60	40.0	4.18e-01	72.0%	87.0%
3fd9A03	1.10.287.1060	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like	0.58	42.0	3.71e-01	80.0%	53.4%
2jpcA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.57	43.0	4.15e-01	88.0%	93.4%
2cwoA01	1.20.58.1200	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RNA silencing suppressor P21, N-terminal domain	0.56	46.0	4.11e-01	94.0%	87.8%
4uzzB00	6.10.250.2800	Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.55	40.0	3.72e-01	80.0%	78.5%
4iggA01	1.10.287.160	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat	0.53	38.0	3.47e-01	78.0%	95.5%
6ynwH01	1.20.20.10	Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C	0.51	37.0	3.30e-01	78.0%	51.4%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4638215	101.35.1.4 ↗	alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3	0.62	48.0	4.82e-01	88.0%	100.0%
3252849	6055.1.1.0 ↗	extended segments › Preprotein translocase subunit YajC › Preprotein translocase subunit YajC › Preprotein translocase subunit YajC	0.62	44.0	4.43e-01	76.0%	76.0%
4801882	192.1.1.1 ↗	alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › MCPsignal	0.59	39.0	3.67e-01	80.0%	54.7%
3988791	192.8.1.0 ↗	alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain	0.56	40.0	3.59e-01	76.0%	55.7%
3809978	3922.1.1.261 ↗	alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › DUF724	0.55	48.0	3.91e-01	98.0%	53.7%
3349592	375.10.1.1 ↗	few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DNA_Pol	0.51	37.0	2.95e-01	80.0%	59.1%

D3 high residues 327-519

PDB

Domain cluster: rep: replication_associated_protein__YP_009345107__Amphibola_crenata_associated_bacilladnavirus_1__1941435__D302-478

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00910.29 best	RNA_helicase	26.1	1.40e-05	52.3%	100.0%

D4 medium residues 11-84

PDB