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replication_associated_protein

Euk-Vir

Hudisavirus_sp.

replication_associated_protein__YP_009408604__Hudisavirus_sp.__2021738

Identity

Accession:
YP_009408604 ↗
Protein ID:
replication_associated_protein
Kingdom:
euk

Quality

78.8 mean pLDDT

Taxonomy

Hudisavirus_sp.

TaxID: 2021738

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-108
PDB
Domain cluster: rep: replication_associated_protein__YP_009237599__Lake_Sarah-associated_circular_molecule_10_Viruses.__X__D15-119
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02407.23 best Viral_Rep 91.7 4.00e-26 87.8% 97.6%
D2 high residues 117-164
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6vudA01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.73 56.0 4.38e-01 87.5% 85.3%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.71 51.0 4.36e-01 77.1% 53.2%
1rq0A01 6.10.140.160 Special › Helix non-globular › Helix Hairpins › 0.70 50.0 4.19e-01 77.1% 51.8%
1t6sB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 61.0 5.21e-01 100.0% 89.6%
4a0zA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 54.0 5.15e-01 93.8% 93.2%
1uurA01 1.20.58.240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › STAT; domain 1 0.67 54.0 4.17e-01 91.7% 84.5%
2e62A01 6.10.140.420 Special › Helix non-globular › Helix Hairpins › 0.66 45.0 4.47e-01 72.9% 75.0%
3sjqC00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.65 45.0 3.78e-01 72.9% 67.5%
2hp0A02 3.30.1330.120 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › 2-methylcitrate dehydratase PrpD 0.64 48.0 3.54e-01 83.3% 51.1%
2db7A01 6.10.250.980 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.62 47.0 4.55e-01 79.2% 77.4%
1hbkA00 1.20.80.10 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.62 43.0 3.59e-01 75.0% 43.8%
3mvpA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.62 50.0 3.70e-01 100.0% 53.7%
1t8tA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 44.0 2.76e-01 79.2% 48.5%
2a6cA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.59 43.0 3.76e-01 81.2% 53.9%
2ktaA01 6.10.140.530 Special › Helix non-globular › Helix Hairpins › 0.57 43.0 4.20e-01 91.7% 100.0%
4hehA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.56 48.0 4.09e-01 100.0% 73.5%
3dyjA01 1.20.1420.10 Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain 0.56 49.0 3.38e-01 100.0% 95.2%
8ctsB01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 46.0 3.76e-01 91.7% 51.7%
3onqA03 1.10.10.2840 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PucR C-terminal helix-turn-helix domain 0.55 48.0 3.53e-01 100.0% 87.0%
6d2qA02 1.20.80.10 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.54 46.0 3.63e-01 97.9% 59.6%
3fkjA02 1.10.10.2240 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.52 43.0 4.05e-01 100.0% 85.9%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4944529 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.75 53.0 4.95e-01 75.0% 66.7%
5032893 101.1.2.128 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF2582 0.74 59.0 5.34e-01 87.5% 92.3%
3289119 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.74 54.0 3.12e-01 77.1% 29.4%
4638458 192.4.1.1 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 0.74 53.0 4.82e-01 77.1% 56.9%
3218641 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.73 52.0 3.82e-01 75.0% 30.0%
4959390 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.73 51.0 4.52e-01 75.0% 55.7%
3738604 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 60.0 4.79e-01 100.0% 61.9%
4965149 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.71 50.0 4.97e-01 75.0% 84.0%
3098420 4006.1.1.1 ↗ alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.70 53.0 4.05e-01 81.2% 38.5%
4179648 192.4.1.1 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 0.70 51.0 4.60e-01 77.1% 57.8%
5062246 5054.1.1.2 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans 0.70 48.0 3.72e-01 72.9% 76.2%
4395525 192.4.1.1 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 0.70 50.0 4.53e-01 77.1% 56.9%
3704884 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.67 48.0 3.10e-01 77.1% 20.9%
3430711 5014.1.1.0 ↗ extended segments › iron-sulfur subunit (ISP) transmembrane anchor › iron-sulfur subunit (ISP) transmembrane anchor › iron-sulfur subunit (ISP) transmembrane anchor 0.66 47.0 4.14e-01 75.0% 55.7%
5029760 7516.1.1.2 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.65 55.0 3.37e-01 97.9% 25.2%
3945729 604.32.1.0 ↗ alpha bundles › Spectrin repeat-like › Recombination protein uvsY › Recombination protein uvsY 0.65 55.0 4.08e-01 100.0% 95.4%
4541653 4970.1.1.0 ↗ alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.63 46.0 3.62e-01 77.1% 53.7%
3386706 221.8.1.0 ↗ a+b two layers › beta-Grasp › GfcC › GfcC 0.62 44.0 3.27e-01 77.1% 36.9%
4013196 4019.1.1.1 ↗ alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.60 48.0 2.85e-01 93.8% 10.5%
3592779 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.59 45.0 3.88e-01 91.7% 94.4%
3742732 223.2.1.9 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Sedlin_N 0.59 48.0 3.38e-01 89.6% 31.1%
1723595 2488.1.1.23 ↗ a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › PF27368 0.58 46.0 2.98e-01 100.0% 24.2%
D3 high residues 175-340
PDB
Domain cluster: rep: replication_associated_protein__YP_009345107__Amphibola_crenata_associated_bacilladnavirus_1__1941435__D302-478