replication_associated_protein

Euk-Vir

Bat_circovirus

replication_associated_protein__YP_009423856__Bat_circovirus__1329650

Identity

88.1 mean pLDDT

Shotokuvirae› Cressdnaviricota› Arfiviricetes› Cirlivirales› Circoviridae› Circovirus› Bat_circovirus

TaxID: 1329650

View cluster (114 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 174-299

PDB

Domain cluster: rep: replication-associated_protein__YP_009001745__Dragonfly_larvae_associated_circular_virus-5_Viruses.__X__D171-266

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00910.29 best	RNA_helicase	48.1	2.10e-12	68.2%	100.0%

D2 medium residues 21-113

PDB

Domain cluster: rep: replication_associated_protein__YP_009237599__Lake_Sarah-associated_circular_molecule_10_Viruses.__X__D15-119

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02407.23 best	Viral_Rep	85.4	3.80e-24	91.4%	96.3%

D3 medium residues 122-161

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6e6qA00	1.10.10.1100	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › BFD-like [2Fe-2S]-binding domain	0.71	57.0	5.31e-01	100.0%	83.9%
3c8cB02	3.30.450.20	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain	0.61	51.0	3.79e-01	100.0%	94.7%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4959044	101.1.8.1 ↗	alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase	0.75	62.0	5.63e-01	100.0%	69.1%
3392384	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.72	57.0	4.68e-01	92.5%	48.0%
5025805	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.69	58.0	5.26e-01	97.5%	74.5%
4985590	101.1.6.0 ↗	alpha arrays › HTH › HTH › TrpR	0.64	50.0	5.09e-01	100.0%	97.5%
5010328	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.63	51.0	4.76e-01	100.0%	85.5%