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replication_factor_small_subunit

Euk-Vir

Pandoravirus_inopinatum

replication_factor_small_subunit__YP_009119241__Pandoravirus_inopinatum__1605721

Identity

Accession:
YP_009119241 ↗
Protein ID:
replication_factor_small_subunit
Kingdom:
euk

Quality

69.7 mean pLDDT

Taxonomy

TaxID: 1605721

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 51-268
PDB
Pfam (3)
AccessionNameScoreE-valueQ covHMM cov
PF00004.36 best AAA 54.9 1.80e-14 56.0% 99.2%
PF13177.13 DNA_pol3_delta2 29.8 8.10e-07 44.5% 47.8%
PF01078.28 Mg_chelatase 27.1 3.60e-06 39.9% 28.0%
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3u61C01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.92 63.0 7.37e-01 71.6% 92.6%
1iqpA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.91 64.0 7.29e-01 71.1% 91.7%
1sxjE01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.89 62.0 7.45e-01 71.1% 99.4%
1jr3A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.87 61.0 6.82e-01 71.1% 97.7%
1in4A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.85 58.0 7.02e-01 70.6% 100.0%
3pvsB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.83 56.0 6.70e-01 70.6% 98.0%
1sxjA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.82 57.0 6.31e-01 70.6% 97.8%
1a5tA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.82 57.0 6.51e-01 70.6% 100.0%
2c9oA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.78 55.0 5.73e-01 70.6% 96.5%
3bosB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.77 53.0 6.15e-01 70.2% 95.1%
1l8qA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.76 53.0 6.05e-01 70.6% 98.2%
6qelJ01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.70 54.0 5.91e-01 99.1% 96.1%
4kxfL01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.68 47.0 4.86e-01 70.2% 88.0%
5bq5B00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.66 53.0 5.75e-01 92.7% 97.3%
1z6tA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.66 46.0 5.08e-01 70.6% 92.1%
4idhA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 50.0 5.11e-01 94.0% 96.6%
8jx6B01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 47.0 4.92e-01 94.5% 100.0%
1rz3A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 37.0 4.03e-01 95.0% 88.5%
ECOD (86)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3575755 2004.1.1.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.99 69.0 7.05e-01 70.2% 99.0%
3591866 2004.1.1.432 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA, Rad17 0.99 69.0 7.46e-01 70.6% 98.4%
3606977 2004.1.1.415 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA, RuvB_N 0.97 68.0 7.59e-01 71.1% 93.9%
4943294 2004.1.1.187 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DNA_pol3_delta2 0.97 69.0 8.12e-01 72.0% 97.5%
4570260 2004.1.1.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.97 67.0 6.92e-01 70.6% 85.7%
3797120 2004.1.1.432 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA, Rad17 0.96 67.0 7.35e-01 70.6% 87.6%
3695548 2004.1.1.425 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA, DUF815 0.96 67.0 7.41e-01 70.2% 92.8%
None 0.96 68.0 7.28e-01 71.1% 97.9%
3252783 2004.1.1.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.96 67.0 7.39e-01 70.2% 85.6%
None 0.96 67.0 8.06e-01 71.1% 99.4%
5003868 2004.1.1.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.96 67.0 7.27e-01 71.1% 95.3%
5046175 2004.1.1.196 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_22 0.96 67.0 6.97e-01 71.1% 99.5%
3593365 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.95 67.0 7.27e-01 71.1% 92.4%
4950384 2004.1.1.187 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DNA_pol3_delta2 0.94 67.0 7.42e-01 72.0% 98.3%
3207788 2004.1.1.187 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DNA_pol3_delta2 0.94 67.0 7.10e-01 72.0% 94.9%
5051560 2004.1.1.187 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DNA_pol3_delta2 0.93 66.0 7.20e-01 71.6% 98.4%
4028365 2004.1.1.187 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DNA_pol3_delta2 0.92 65.0 7.12e-01 71.6% 98.9%
3952673 2004.1.1.187 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DNA_pol3_delta2 0.92 70.0 7.55e-01 77.1% 98.4%
3348287 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.92 64.0 6.71e-01 70.6% 94.0%
3665275 2004.1.1.187 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DNA_pol3_delta2 0.92 64.0 6.71e-01 70.6% 93.0%
None 0.91 64.0 7.28e-01 71.1% 100.0%
4965688 2004.1.1.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.91 64.0 7.25e-01 72.0% 99.4%
None 0.91 64.0 7.07e-01 71.1% 96.6%
3439660 2004.1.1.187 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DNA_pol3_delta2 0.90 62.0 6.87e-01 70.2% 94.4%
3357405 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.89 63.0 6.81e-01 71.6% 98.9%
3366541 2004.1.1.187 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DNA_pol3_delta2 0.88 62.0 6.70e-01 70.6% 93.5%
4995734 2004.1.1.187 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DNA_pol3_delta2 0.88 61.0 7.23e-01 70.6% 98.1%
3738034 2004.1.1.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.88 59.0 6.31e-01 70.6% 76.4%
3271392 2004.1.1.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.87 59.0 6.49e-01 70.6% 82.2%
3603741 2004.1.1.187 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DNA_pol3_delta2 0.87 57.0 6.87e-01 72.9% 95.3%
3542673 2004.1.1.425 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA, DUF815 0.87 60.0 6.75e-01 71.1% 87.4%
3841542 2004.1.1.432 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA, Rad17 0.87 60.0 6.95e-01 71.1% 92.7%
None 0.86 61.0 7.15e-01 72.5% 97.5%
3838853 2004.1.1.125 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RuvB_N 0.86 57.0 7.01e-01 70.6% 100.0%
3675905 2004.1.1.187 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DNA_pol3_delta2 0.86 61.0 6.63e-01 71.6% 93.0%
4465649 2004.1.1.432 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA, Rad17 0.86 60.0 7.16e-01 72.0% 99.4%
4488208 2004.1.1.432 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA, Rad17 0.86 60.0 6.98e-01 71.6% 93.9%
4001685 2004.1.1.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.86 69.0 7.03e-01 90.4% 83.3%
4285993 2004.1.1.125 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RuvB_N 0.86 58.0 7.00e-01 70.2% 98.7%
4947826 2004.1.1.1214 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RCF1-5-like_lid 0.86 60.0 7.01e-01 70.6% 97.5%
None 0.84 58.0 6.95e-01 71.1% 98.1%
5028604 2004.1.1.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.84 59.0 7.03e-01 71.1% 100.0%
4025771 2004.1.1.209 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sigma54_activ_2 0.84 57.0 6.87e-01 71.6% 100.0%
None 0.84 58.0 6.90e-01 70.2% 100.0%
4929054 2004.1.1.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.83 71.0 7.44e-01 100.0% 96.5%
3176113 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.83 58.0 6.19e-01 71.6% 89.2%
3783664 2004.1.1.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.81 57.0 6.51e-01 71.6% 93.5%
4931959 2004.1.1.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.81 72.0 7.46e-01 100.0% 97.1%
3612543 2004.1.1.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.81 57.0 6.51e-01 70.6% 93.9%
4279180 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.81 55.0 6.43e-01 72.5% 93.8%
None 0.81 70.0 7.32e-01 100.0% 97.0%
4941940 2004.1.1.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.81 71.0 7.39e-01 100.0% 98.0%
4936471 2004.1.1.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.80 69.0 7.26e-01 100.0% 97.0%
4646832 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.80 70.0 7.21e-01 100.0% 94.3%
4943098 2004.1.1.1214 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RCF1-5-like_lid 0.80 70.0 7.28e-01 100.0% 96.6%
None 0.79 56.0 5.77e-01 71.1% 89.8%
5037967 2004.1.1.189 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_16 0.78 55.0 5.90e-01 71.1% 97.4%
3587797 2004.1.1.187 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DNA_pol3_delta2 0.77 68.0 7.06e-01 97.7% 96.6%
4940259 2004.1.1.196 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_22 0.77 54.0 5.60e-01 70.6% 89.3%
3483060 2004.1.1.366 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NPHP3_N 0.77 57.0 6.21e-01 74.8% 92.8%
4964454 2004.1.1.196 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_22 0.77 53.0 5.71e-01 70.2% 92.6%
3739685 2004.1.1.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.76 53.0 5.59e-01 70.2% 94.9%
3965501 2004.1.1.187 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DNA_pol3_delta2 0.74 67.0 6.82e-01 97.2% 96.7%
3603681 2004.1.1.343 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_14 0.74 54.0 5.82e-01 76.1% 86.3%
3875594 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.74 51.0 4.95e-01 70.6% 91.0%
4064652 2004.1.1.187 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DNA_pol3_delta2 0.73 68.0 6.85e-01 97.7% 97.2%
3165248 2004.1.1.187 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DNA_pol3_delta2 0.73 64.0 6.60e-01 95.0% 96.1%
4985516 2004.1.1.1215 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Cdc6_lid 0.73 67.0 6.11e-01 96.8% 95.6%
3335826 2004.1.1.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.72 55.0 6.04e-01 78.4% 100.0%
4197849 148.1.3.198 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Bac_DnaA 0.71 65.0 6.25e-01 96.3% 97.6%
3943709 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.70 63.0 6.42e-01 99.5% 96.7%
4145615 2004.1.1.35 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Bac_DnaA 0.70 65.0 6.15e-01 96.8% 97.2%
5062874 2004.1.1.343 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_14 0.67 58.0 5.89e-01 97.2% 91.2%
4955162 2004.1.1.343 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_14 0.67 56.0 5.71e-01 97.2% 89.5%
5067816 2004.1.1.189 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_16 0.67 60.0 5.48e-01 95.4% 97.5%
4943781 2004.1.1.1085 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PF30184 0.66 57.0 4.93e-01 97.2% 59.7%
5079408 2004.1.1.343 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_14 0.66 59.0 5.94e-01 97.7% 92.7%
5022193 2004.1.1.343 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_14 0.66 60.0 5.82e-01 97.2% 88.1%
4940741 2004.1.1.343 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_14 0.66 59.0 5.80e-01 97.7% 88.7%
4970114 2004.1.1.343 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_14 0.65 60.0 4.75e-01 96.3% 74.6%
5025456 2004.1.1.343 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_14 0.65 58.0 5.85e-01 96.3% 94.0%
4968084 2004.1.1.343 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_14 0.65 55.0 5.58e-01 97.7% 88.2%
4952559 2004.1.1.343 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_14 0.64 59.0 5.45e-01 98.2% 89.5%
3356823 2004.1.1.56 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC 0.63 58.0 5.73e-01 98.2% 98.3%
5059467 2004.1.1.343 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_14 0.62 57.0 5.43e-01 98.2% 89.0%
3976511 2004.1.1.292 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AFG1_ATPase 0.59 52.0 5.19e-01 93.1% 96.4%