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replication_origin-binding_helicase

Euk-Vir

Acanthamoeba_polyphaga_moumouvirus

replication_origin-binding_helicase__YP_007353989__Acanthamoeba_polyphaga_moumouvirus__1269028

Identity

Accession:
YP_007353989 ↗
Protein ID:
replication_origin-binding_helicase
Kingdom:
euk

Quality

62.7 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Imitervirales› Mimiviridae› Moumouvirus› Acanthamoeba_polyphaga_moumouvirus

TaxID: 1269028

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 820-899
PDB
Domain cluster: rep: hypothetical_protein_MIMI_gp0010__YP_003986484__Acanthamoeba_polyphaga_mimivirus__212035__D130-195
D2 high residues 915-1042
PDB
D3 medium residues 295-355
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3qwmA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 45.0 3.60e-01 78.7% 50.4%
1w4tA02 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.61 50.0 4.25e-01 90.2% 55.6%
1zc3B00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 44.0 3.78e-01 83.6% 56.9%
7cd1D01 2.60.200.10 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.57 49.0 3.53e-01 95.1% 54.3%
2qkdA03 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.57 43.0 4.52e-01 86.9% 100.0%
2c9wA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.56 43.0 3.52e-01 83.6% 57.5%
2v73A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 45.0 3.41e-01 100.0% 72.7%
4ozuA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 45.0 2.89e-01 100.0% 28.0%
2l1tA00 2.30.110.70 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.54 46.0 3.89e-01 98.4% 85.3%
3tfmA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 39.0 3.32e-01 83.6% 51.4%
1wvhA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 44.0 3.47e-01 96.7% 100.0%
2giaB00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.51 44.0 3.41e-01 100.0% 93.8%
1p5tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 43.0 3.70e-01 98.4% 93.4%
1y8fA00 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.51 37.0 3.95e-01 86.9% 96.1%
2l31A00 3.30.1740.10 Alpha Beta › 2-Layer Sandwich › first zn-finger domain of poly(adp-ribose) polymerase-1 › Zinc finger, PARP-type 0.50 38.0 3.23e-01 83.6% 51.8%
2iecD00 3.30.1300.20 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 7,8-dihydroneopterin aldolase (MptD) 0.50 41.0 3.38e-01 93.4% 59.0%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3239076 389.1.2.0 ↗ few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain 0.69 52.0 5.40e-01 88.5% 90.9%
3349294 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.61 51.0 3.95e-01 95.1% 81.4%
3616431 5.1.4.103 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DCAF17 0.60 53.0 3.12e-01 100.0% 21.8%
4463837 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.60 46.0 3.88e-01 83.6% 73.3%
4011813 5.1.4.16 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.60 53.0 3.20e-01 100.0% 34.6%
4517523 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.58 46.0 3.94e-01 86.9% 81.0%
5043543 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.56 45.0 3.07e-01 95.1% 68.5%
3976351 219.1.1.40 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › AmiA-like 0.54 45.0 3.01e-01 91.8% 83.2%
3943050 274.1.1.51 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › PF27121 0.54 47.0 3.42e-01 100.0% 56.0%
4953347 375.1.1.299 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › CPxCG_zf 0.53 36.0 3.83e-01 72.1% 100.0%
5081724 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.53 44.0 3.18e-01 98.4% 31.0%
3336718 377.1.2.1 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger › zf-PARP 0.52 36.0 3.32e-01 73.8% 58.8%
3939412 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 44.0 3.87e-01 98.4% 96.8%
3395156 377.1.2.1 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger › zf-PARP 0.52 38.0 3.20e-01 82.0% 53.0%
5044393 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 36.0 3.62e-01 73.8% 75.0%
3406401 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.50 43.0 3.26e-01 98.4% 71.3%
D4 medium residues 563-714_782-804
PDB
Domain cluster: rep: CP025712.1__AUO37541.1__YDC107_5424__00064__D413-546_602-643
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02399.22 best Herpes_ori_bp 42.2 4.40e-11 83.4% 14.6%
D5 medium residues 715-781
PDB