replication_protein_1a

Euk-Vir

Amazon_lily_mild_mottle_virus

replication_protein_1a__YP_006576518__Amazon_lily_mild_mottle_virus__1195163

Identity

70.2 mean pLDDT

Orthornavirae› Kitrinoviricota› Alsuviricetes› Martellivirales› Bromoviridae› Anulavirus› Anulavirus_ALMMV

TaxID: 1195163

View cluster (6 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 649-785

PDB

Domain cluster: rep: KX578043.1__AOT27930.1__X__00015__D87-267

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01443.25 best	Viral_helicase1	77.7	1.70e-21	88.3%	47.4%

D2 high residues 799-941

PDB

Domain cluster: rep: TGB1_protein__NP_619560__Garlic_latent_virus__12458__D129-228

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01443.25 best	Viral_helicase1	53.1	5.60e-14	85.3%	30.3%

D3 medium residues 166-297

PDB

Domain cluster: rep: hypothetical_protein_AACVs1_gp2__YP_009011226__Anopheline-associated_C_virus_Viruses.__X__D149-168_223-340

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01660.23 best	Vmethyltransf	81.5	8.30e-23	98.5%	41.2%

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2pxxA00	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.59	48.0	4.03e-01	100.0%	52.6%
2dulA01	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.58	53.0	4.00e-01	100.0%	51.0%
5hfjC00	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.54	40.0	3.47e-01	93.9%	50.5%
2pliA00	3.30.465.10	Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 ›	0.52	30.0	3.68e-01	88.6%	90.5%
2hzmG01	3.30.310.180	Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein ›	0.52	27.0	2.92e-01	88.6%	55.7%
1jssA00	3.30.530.20	Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain	0.51	36.0	3.20e-01	72.7%	95.5%
4bfiB02	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.51	25.0	2.94e-01	83.3%	64.4%
2nwaA01	2.40.240.20	Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1	0.51	26.0	3.36e-01	78.8%	86.7%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4271433	246.3.1.1 ↗	a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos	0.69	39.0	3.08e-01	90.2%	28.6%
3170060	2007.1.16.0 ↗	a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Iron-sulphur enzyme Dph2	0.60	41.0	4.00e-01	92.4%	62.8%
4928046	223.2.1.0 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like	0.56	31.0	3.30e-01	95.5%	57.5%
4927093	223.2.1.0 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like	0.54	31.0	3.20e-01	95.5%	57.0%
5051305	223.2.1.0 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like	0.53	32.0	3.37e-01	71.2%	64.8%
5047859	319.1.1.0 ↗	beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones	0.53	27.0	3.63e-01	77.3%	92.9%
4074306	244.1.1.0 ↗	a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C	0.52	31.0	2.99e-01	78.0%	51.0%
3405953	11.1.1.97 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set	0.52	29.0	3.17e-01	84.8%	65.7%
2774000	881.4.1.1 ↗	a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB › MucB_RseB_C	0.52	30.0	3.38e-01	90.9%	72.8%

D4 medium residues 298-410

PDB