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replication_protein

Euk-Vir

Beet_virus_Q

replication_protein__NP_612606__Beet_virus_Q__71972

Identity

Accession:: NP_612606 ↗
Protein ID:: replication_protein
Kingdom:: euk

Quality

67.1 mean pLDDT

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 362-466_498-515

PDB

D2 high residues 878-993

PDB

Domain cluster: rep: replicase__NP_059451__Soil-borne_cereal_mosaic_virus__100887__D845-991

D3 high residues 1007-1150

PDB

Domain cluster: rep: KX578043.1__AOT27930.1__X__00015__D87-267

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01443.25 best	Viral_helicase1	90.5	2.10e-25	93.1%	53.5%

D4 high residues 1175-1302

PDB

Domain cluster: rep: TGB1_protein__NP_619560__Garlic_latent_virus__12458__D129-228

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01443.25 best	Viral_helicase1	59.8	5.00e-16	81.2%	33.3%

D5 medium residues 150-217

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3e74A02	3.20.20.140	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases	0.55	46.0	3.08e-01	100.0%	60.9%
1etkA00	1.10.10.60	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like	0.51	38.0	3.77e-01	82.4%	85.3%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3691488	2002.1.1.111 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI	0.56	42.0	2.79e-01	80.9%	91.0%

D6 medium residues 218-358

PDB

Domain cluster: rep: hypothetical_protein_AACVs1_gp2__YP_009011226__Anopheline-associated_C_virus_Viruses.__X__D149-168_223-340

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01660.23 best	Vmethyltransf	93.7	1.60e-26	98.6%	43.1%

CATH (14)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4xpkA00	3.40.630.30	Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT)	0.67	37.0	3.71e-01	84.4%	53.9%
4krgA01	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.61	52.0	4.28e-01	91.5%	75.5%
4kvxA00	3.40.630.30	Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT)	0.59	36.0	3.57e-01	84.4%	57.2%
2bkyX00	3.30.110.20	Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain	0.58	36.0	4.35e-01	84.4%	100.0%
2bbeA00	3.30.70.100	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.58	28.0	3.23e-01	85.8%	61.2%
7dluA03	3.30.70.100	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.58	26.0	3.35e-01	85.8%	73.4%
4bbyA05	3.30.300.330	Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 ›	0.57	30.0	3.39e-01	86.5%	64.8%
1x7vA00	3.30.70.100	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.57	27.0	3.20e-01	85.8%	62.2%
2fb0A00	3.30.70.100	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.56	27.0	3.20e-01	86.5%	64.9%
2ei9A00	3.60.10.10	Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase	0.55	41.0	3.62e-01	87.9%	52.3%
3bm7A00	3.30.70.100	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.53	28.0	3.14e-01	86.5%	65.1%
2dibA01	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.52	29.0	3.44e-01	90.8%	79.4%
1iujA00	3.30.70.100	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.50	24.0	2.72e-01	85.1%	55.9%
1vhkA01	2.40.240.20	Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1	0.50	27.0	3.43e-01	80.1%	95.9%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4961790	2003.1.5.0 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases	0.64	52.0	4.35e-01	85.1%	79.1%
3307575	331.4.1.0 ↗	a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1	0.56	30.0	3.57e-01	87.2%	74.0%
3710689	331.4.1.0 ↗	a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1	0.55	29.0	3.40e-01	85.8%	71.0%
3217200	207.1.1.52 ↗	beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2	0.53	43.0	3.38e-01	85.8%	48.3%
5014776	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.52	29.0	3.58e-01	84.4%	91.3%
None	—		0.51	37.0	2.78e-01	75.2%	89.2%
3917082	5.1.4.167 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR19_1st	0.50	36.0	2.75e-01	75.2%	89.2%