restriction_endonuclease

Euk-Vir

Marseillevirus_marseillevirus

restriction_endonuclease__YP_003406899__Marseillevirus_marseillevirus__694581

Identity

80.2 mean pLDDT

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Marseilleviridae› Marseillevirus› Marseillevirus_marseillevirus

TaxID: 694581

View cluster (37 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 47-134

PDB

Domain cluster: rep: SRR1747018_scaffold_15_prodigal-single.1__X__X__00405__D414-500

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF14311.13 best	DUF4379	34.3	3.10e-08	62.5%	91.1%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2ostD00	3.40.1350.10	Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 ›	0.51	40.0	3.50e-01	85.2%	98.5%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3605531	375.1.1.77 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF4379	0.83	58.0	5.94e-01	71.6%	81.0%
3592370	150.5.1.0 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like	0.72	63.0	5.59e-01	93.2%	90.8%
3566431	389.1.2.1 ↗	few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › Sushi	0.58	36.0	4.19e-01	71.6%	91.7%
3336463	386.1.1.0 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers	0.54	35.0	3.64e-01	87.5%	71.8%
2392229	376.1.3.6 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-CW	0.54	32.0	3.40e-01	78.4%	65.8%

D2 high residues 422-530

PDB

Domain cluster: rep: IMGVR_UViG_3300021426_000003-3300021426-Ga0224482_1000007218__D192-304

D3 medium residues 137-207

PDB

Domain cluster: rep: restriction_endonuclease__YP_009345354__Noumeavirus__1955558__D260-319

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF14311.13 best	DUF4379	37.3	3.60e-09	78.9%	98.2%

D4 medium residues 208-276

PDB

Domain cluster: rep: restriction_endonuclease__YP_009345354__Noumeavirus__1955558__D260-319

D5 medium residues 277-354

PDB

Domain cluster: rep: SRR1747018_scaffold_15_prodigal-single.1__X__X__00405__D414-500

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF14311.13 best	DUF4379	27.2	4.80e-06	73.1%	83.9%

D6 medium residues 355-408

PDB

Domain cluster: rep: restriction_endonuclease__YP_007354634__Acanthamoeba_polyphaga_moumouvirus__1269028__D242-298