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restriction_endonuclease

Euk-Vir

Acanthamoeba_polyphaga_moumouvirus

restriction_endonuclease__YP_007354634__Acanthamoeba_polyphaga_moumouvirus__1269028

Identity

Accession:
YP_007354634 ↗
Protein ID:
restriction_endonuclease
Kingdom:
euk

Quality

83.1 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Imitervirales› Mimiviridae› Moumouvirus› Acanthamoeba_polyphaga_moumouvirus

TaxID: 1269028

Cluster

View cluster (37 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-69
PDB
Domain cluster: rep: restriction_endonuclease__YP_009345354__Noumeavirus__1955558__D260-319
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14311.13 best DUF4379 25.7 1.50e-05 76.4% 71.4%
D2 high residues 89-157
PDB
Domain cluster: rep: SRR1747018_scaffold_15_prodigal-single.1__X__X__00405__D414-500
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14311.13 best DUF4379 35.4 1.40e-08 78.3% 91.1%
D3 high residues 299-433
PDB
Domain cluster: rep: LacPavin_0818_WC40_scaffold_193576_prodigal-single.1__X__X__00294__D106-220
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04480.19 best DUF559 26.0 9.90e-06 79.3% 49.5%
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3r3pB00 3.40.960.10 Alpha Beta › 3-Layer(aba) Sandwich › Endonuclease; Chain A › VSR Endonuclease 0.85 59.0 6.94e-01 82.2% 98.0%
1vsrA00 3.40.960.10 Alpha Beta › 3-Layer(aba) Sandwich › Endonuclease; Chain A › VSR Endonuclease 0.76 71.0 7.13e-01 97.8% 100.0%
3drwB01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.68 54.0 3.98e-01 83.0% 95.8%
1y88A01 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.64 47.0 4.86e-01 98.5% 81.6%
4impA03 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 51.0 4.14e-01 95.6% 90.2%
2ewfA03 3.40.91.50 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.58 50.0 4.19e-01 92.6% 77.3%
3lucA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.57 45.0 4.61e-01 83.7% 87.5%
2c4kA01 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 44.0 4.08e-01 81.5% 91.0%
6z6fA01 3.40.800.20 Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain 0.55 43.0 3.18e-01 83.0% 89.7%
2d88A01 1.10.418.10 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain 0.54 31.0 3.47e-01 100.0% 71.4%
1vffA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.53 47.0 3.29e-01 96.3% 57.7%
1v77A00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.52 47.0 4.14e-01 99.3% 89.6%
3f2bA02 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.52 48.0 3.88e-01 100.0% 91.6%
7bobA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.52 44.0 3.17e-01 88.9% 35.5%
3h4rA00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.52 46.0 3.98e-01 100.0% 66.7%
4yheA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.51 46.0 3.35e-01 99.3% 90.0%
2ffiA00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.51 47.0 3.71e-01 100.0% 75.1%
5oycB00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.51 46.0 3.37e-01 99.3% 90.6%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3964655 2008.1.1.17 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF559 0.87 63.0 6.95e-01 83.0% 90.0%
3258001 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.86 66.0 6.56e-01 79.3% 90.7%
4984120 2008.1.1.17 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF559 0.84 64.0 7.26e-01 79.3% 100.0%
5069856 2008.1.1.17 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF559 0.84 59.0 6.34e-01 80.0% 83.5%
3953141 2008.1.1.121 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › MTES_1575 0.80 59.0 6.67e-01 83.7% 98.1%
3958985 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.80 58.0 6.61e-01 80.0% 100.0%
3963196 2008.1.1.17 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF559 0.79 57.0 6.36e-01 83.0% 92.6%
4467650 2008.1.1.167 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Vsr, DUF559 0.79 62.0 6.27e-01 81.5% 84.4%
5056125 2008.1.1.14 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Vsr 0.78 62.0 6.32e-01 81.5% 90.0%
3962618 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.77 57.0 6.06e-01 81.5% 85.8%
3953988 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.77 56.0 6.30e-01 83.0% 96.2%
4995722 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.77 55.0 6.33e-01 81.5% 100.0%
4995749 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.77 59.0 6.52e-01 82.2% 98.2%
4027159 2008.1.1.86 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAP 0.77 58.0 6.31e-01 81.5% 92.2%
3673147 2008.1.1.86 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAP 0.76 55.0 5.91e-01 80.7% 87.0%
3808239 2008.1.1.86 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAP 0.76 55.0 6.27e-01 81.5% 100.0%
3278386 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.75 59.0 6.02e-01 83.7% 85.4%
4927469 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.74 58.0 6.08e-01 83.7% 89.6%
4030490 2008.1.1.124 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF6831 0.73 55.0 6.19e-01 79.3% 100.0%
4026598 2008.1.1.86 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAP 0.73 56.0 6.03e-01 83.7% 94.8%
4946865 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.71 51.0 5.67e-01 74.1% 100.0%
4025795 2008.1.1.86 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAP 0.71 58.0 5.93e-01 85.2% 92.3%
3239374 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 52.0 3.41e-01 80.0% 22.5%
4983302 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.67 52.0 5.18e-01 81.5% 90.7%
4402765 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.65 52.0 5.36e-01 84.4% 97.7%
4928387 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.63 51.0 4.82e-01 100.0% 70.6%
3969876 2006.1.6.15 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF58 0.63 49.0 4.15e-01 82.2% 79.8%
3883726 2008.1.1.107 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD 0.63 50.0 4.72e-01 83.7% 91.9%
4991917 2008.1.1.107 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD 0.63 48.0 4.82e-01 80.7% 82.9%
5044802 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.62 50.0 4.27e-01 84.4% 65.7%
3506045 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.62 45.0 4.05e-01 92.6% 54.6%
3271719 2003.1.5.408 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › KR 0.59 52.0 3.51e-01 96.3% 48.8%
4670642 2008.1.1.6 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 0.59 44.0 4.74e-01 97.8% 92.0%
3934768 2006.1.6.33 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_4 0.58 45.0 3.91e-01 82.2% 88.1%
5005960 2008.1.1.4 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.55 42.0 3.85e-01 100.0% 59.2%
3432158 2006.1.5.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Arginase/deacetylase › Hist_deacetyl 0.55 45.0 3.34e-01 89.6% 76.8%
4967445 2002.1.1.77 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › RNase_P_p30 0.53 48.0 4.13e-01 100.0% 84.1%
4239451 2002.1.1.77 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › RNase_P_p30 0.53 48.0 4.02e-01 99.3% 84.3%
5077138 2002.1.1.77 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › RNase_P_p30 0.53 48.0 4.06e-01 98.5% 82.2%
5055947 2002.1.1.77 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › RNase_P_p30 0.53 48.0 4.08e-01 99.3% 82.7%
5043933 2006.1.5.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Arginase/deacetylase › Hist_deacetyl 0.53 48.0 3.57e-01 99.3% 55.9%
4976044 2002.1.1.77 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › RNase_P_p30 0.53 48.0 4.01e-01 99.3% 83.9%
4952517 2002.1.1.77 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › RNase_P_p30 0.53 47.0 4.00e-01 99.3% 84.8%
4931428 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.53 48.0 4.08e-01 99.3% 84.1%
4998286 2002.1.1.77 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › RNase_P_p30 0.52 47.0 3.99e-01 100.0% 83.5%
8709 2002.1.1.77 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › RNase_P_p30 0.52 47.0 4.14e-01 99.3% 89.6%
5030662 2002.1.1.77 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › RNase_P_p30 0.52 47.0 3.95e-01 99.3% 83.8%
3807836 2006.1.6.4 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › Ku_N 0.52 47.0 3.80e-01 98.5% 68.1%
4972512 2002.1.1.77 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › RNase_P_p30 0.52 47.0 3.92e-01 99.3% 83.8%
5023896 2002.1.1.77 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › RNase_P_p30 0.52 47.0 3.94e-01 100.0% 85.5%
4992997 2002.1.1.77 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › RNase_P_p30 0.52 47.0 3.94e-01 100.0% 81.7%
4938252 2002.1.1.77 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › RNase_P_p30 0.52 46.0 4.10e-01 97.8% 82.6%
4183092 2002.1.1.77 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › RNase_P_p30 0.52 46.0 4.00e-01 99.3% 87.0%
4947052 2002.1.1.77 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › RNase_P_p30 0.52 47.0 4.04e-01 99.3% 88.6%
5043932 2002.1.1.77 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › RNase_P_p30 0.51 47.0 3.96e-01 99.3% 85.5%
4941782 2002.1.1.77 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › RNase_P_p30 0.51 47.0 3.98e-01 100.0% 83.6%
5051054 2002.1.1.77 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › RNase_P_p30 0.51 46.0 3.85e-01 99.3% 83.8%
None — 0.51 44.0 3.58e-01 92.6% 88.8%
4929229 2002.1.1.232 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Fer4_12 0.51 45.0 3.79e-01 97.0% 76.1%
5032372 2002.1.1.25 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HMGL-like 0.51 45.0 4.03e-01 97.0% 78.9%
4977615 2002.1.1.77 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › RNase_P_p30 0.51 46.0 3.88e-01 100.0% 82.5%
D4 medium residues 158-241
PDB
Domain cluster: rep: SRR1747018_scaffold_15_prodigal-single.1__X__X__00405__D414-500
D5 medium residues 242-298
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14311.13 best DUF4379 27.1 5.20e-06 91.2% 82.1%
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3dorA02 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.62 45.0 3.73e-01 78.9% 90.7%
3icyA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.62 49.0 3.91e-01 87.7% 58.5%
3oloA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 47.0 3.90e-01 93.0% 79.3%
4hr6B02 4.10.470.10 Few Secondary Structures › Irregular › Ricin (A Subunit), domain 2 › Ricin (A Subunit), domain 2 0.56 40.0 3.63e-01 78.9% 82.6%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 44.0 4.08e-01 84.2% 80.0%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.56 42.0 4.54e-01 84.2% 95.8%
1yr1A00 3.40.50.10960 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 46.0 3.74e-01 98.2% 86.6%
1obsA02 4.10.470.10 Few Secondary Structures › Irregular › Ricin (A Subunit), domain 2 › Ricin (A Subunit), domain 2 0.55 41.0 3.72e-01 84.2% 86.7%
3ktzA02 4.10.470.10 Few Secondary Structures › Irregular › Ricin (A Subunit), domain 2 › Ricin (A Subunit), domain 2 0.55 41.0 3.74e-01 84.2% 85.5%
2qetA02 4.10.470.10 Few Secondary Structures › Irregular › Ricin (A Subunit), domain 2 › Ricin (A Subunit), domain 2 0.55 41.0 3.75e-01 84.2% 85.2%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 39.0 3.71e-01 77.2% 78.6%
4qmaA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 41.0 3.15e-01 84.2% 76.9%
2dk3A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 42.0 3.69e-01 84.2% 75.6%
1xf1A05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 42.0 3.56e-01 87.7% 84.2%
2zr1A02 4.10.470.10 Few Secondary Structures › Irregular › Ricin (A Subunit), domain 2 › Ricin (A Subunit), domain 2 0.54 39.0 3.55e-01 80.7% 85.5%
1v5vA02 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.54 43.0 3.78e-01 94.7% 65.2%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 40.0 3.98e-01 80.7% 91.7%
1aorA02 1.10.569.10 Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 0.52 44.0 3.15e-01 100.0% 74.7%
1x6oA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 39.0 3.52e-01 82.5% 84.8%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.51 36.0 3.49e-01 77.2% 63.6%
2ldmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 39.0 4.08e-01 84.2% 94.3%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 39.0 3.54e-01 82.5% 75.6%
2pt7C01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.51 41.0 3.49e-01 96.5% 54.7%
2zutA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 39.0 3.87e-01 86.0% 94.9%
1s68A02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.50 39.0 3.13e-01 84.2% 59.3%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 37.0 3.96e-01 78.9% 98.0%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2512682 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.75 42.0 4.33e-01 80.7% 58.2%
5081654 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.74 65.0 6.38e-01 100.0% 90.0%
5049906 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.67 40.0 3.97e-01 75.4% 56.7%
4943204 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.60 49.0 3.94e-01 94.7% 71.7%
428210 3243.1.1.1 ↗ alpha complex topology › VopL dimerization domain › VopL dimerization domain › VopL dimerization domain › VCD 0.59 46.0 3.15e-01 87.7% 34.5%
3942661 620.1.1.2 ↗ alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DinB 0.59 46.0 3.38e-01 84.2% 75.5%
3723441 7502.1.1.7 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon2 0.57 49.0 3.95e-01 100.0% 65.8%
4958385 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.57 34.0 3.98e-01 77.2% 85.0%
4660169 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.57 47.0 3.95e-01 91.2% 73.7%
4556449 6020.1.1.1 ↗ a+b two layers › Beta domain of DivIB/FtsQ › Beta domain of DivIB/FtsQ › Beta domain of DivIB/FtsQ › FtsQ_DivIB_C 0.56 48.0 3.71e-01 98.2% 78.2%
4357648 6020.1.1.1 ↗ a+b two layers › Beta domain of DivIB/FtsQ › Beta domain of DivIB/FtsQ › Beta domain of DivIB/FtsQ › FtsQ_DivIB_C 0.55 45.0 3.61e-01 96.5% 72.8%
137877 292.1.1.1 ↗ a+b two layers › RIP/Polo-box domain › Ribosome inactivating proteins (RIP) › Ribosome inactivating proteins (RIP) › RIP 0.54 41.0 2.80e-01 87.7% 80.1%
3546309 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.53 41.0 3.72e-01 82.5% 78.7%
3510676 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 42.0 3.57e-01 86.0% 54.7%
4479970 6020.1.1.1 ↗ a+b two layers › Beta domain of DivIB/FtsQ › Beta domain of DivIB/FtsQ › Beta domain of DivIB/FtsQ › FtsQ_DivIB_C 0.52 43.0 3.41e-01 100.0% 41.5%
4960065 3740.1.1.4 ↗ alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.52 38.0 2.55e-01 80.7% 20.0%
5036086 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 42.0 3.79e-01 91.2% 93.8%
3654105 292.1.1.1 ↗ a+b two layers › RIP/Polo-box domain › Ribosome inactivating proteins (RIP) › Ribosome inactivating proteins (RIP) › RIP 0.52 39.0 2.68e-01 87.7% 80.4%
4601711 2484.1.1.47 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › T2SSL 0.52 32.0 2.79e-01 87.7% 36.8%
3725073 2007.1.19.2 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin 0.52 38.0 2.33e-01 80.7% 12.5%
3968942 2004.1.1.23 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom 0.51 37.0 2.38e-01 77.2% 17.0%
4683204 101.35.1.5 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 0.51 37.0 3.11e-01 89.5% 42.9%
2577475 7577.1.1.2 ↗ a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_3 0.51 32.0 2.23e-01 75.4% 18.1%
4172704 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.51 32.0 3.25e-01 75.4% 63.6%
4971532 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 44.0 4.16e-01 98.2% 95.7%
4998989 3740.1.1.4 ↗ alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.50 37.0 2.43e-01 80.7% 17.5%