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reverse_transcriptase

Euk-Vir

Peanut_chlorotic_streak_virus

reverse_transcriptase__NP_042513__Peanut_chlorotic_streak_virus__35593

Identity

Accession:: NP_042513 ↗
Protein ID:: reverse_transcriptase
Kingdom:: euk

Quality

78.0 mean pLDDT

Taxonomy

Pararnavirae› Artverviricota› Revtraviricetes› Ortervirales› Caulimoviridae› Soymovirus› Peanut_chlorotic_streak_virus

TaxID: 35593

Cluster

View cluster (17 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-148

PDB

Domain cluster: representative

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02160.20 best	Peptidase_A3	117.2	1.00e-33	95.7%	62.0%
PF00077.26	RVP	22.8	1.30e-04	69.5%	87.1%

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3s8iA00	2.40.70.10	Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases	0.84	69.0	7.37e-01	90.8%	96.0%
3slzA00	2.40.70.10	Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases	0.81	60.0	6.64e-01	86.5%	94.7%
3liyA00	2.40.70.10	Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases	0.79	54.0	5.96e-01	70.2%	88.8%
3sqfA00	2.40.70.10	Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases	0.78	51.0	6.07e-01	75.2%	97.9%
1yg9A02	2.40.70.10	Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases	0.64	50.0	5.22e-01	81.6%	99.2%
2lmcB00	2.40.50.100	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain	0.58	21.0	3.01e-01	89.4%	68.9%
3ulbA01	2.30.29.30	Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	0.57	28.0	3.53e-01	88.7%	78.3%
1ul7A00	3.30.310.80	Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1	0.54	26.0	3.06e-01	91.5%	60.8%
1xr0B01	2.30.29.30	Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	0.53	29.0	3.55e-01	88.7%	82.4%
5ejrA03	2.30.29.30	Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	0.52	26.0	3.17e-01	87.9%	77.5%
1fr3A00	2.40.50.100	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain	0.51	24.0	3.20e-01	80.1%	86.6%

ECOD (73)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3421072	1.1.1.30 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease › PF30863	0.89	66.0	7.36e-01	76.6%	95.7%
3436417	1.1.1.17 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP_2	0.89	74.0	7.73e-01	87.9%	93.1%
3225435	1.1.1.8 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas	0.88	59.0	6.63e-01	76.6%	85.0%
3427964	1.1.1.17 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP_2	0.87	74.0	7.57e-01	89.4%	91.1%
3370298	1.1.1.3 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP	0.87	65.0	7.40e-01	83.0%	98.2%
3931768	1.1.1.0 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease	0.87	68.0	7.29e-01	89.4%	92.0%
3504655	1.1.1.18 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2	0.86	61.0	6.71e-01	71.6%	88.7%
3334785	1.1.1.3 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP	0.86	71.0	7.45e-01	88.7%	93.1%
3529283	1.1.1.30 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease › PF30863	0.86	66.0	7.06e-01	79.4%	100.0%
3925981	1.1.1.8 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas	0.86	60.0	6.84e-01	85.1%	91.8%
3559341	1.1.1.30 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease › PF30863	0.86	67.0	6.73e-01	80.1%	90.0%
3447999	1.1.1.17 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP_2	0.85	70.0	7.55e-01	86.5%	99.2%
3868675	1.1.1.6 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease	0.85	71.0	6.63e-01	90.8%	71.8%
3735567	1.1.1.6 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease	0.85	70.0	5.82e-01	90.8%	53.3%
3518811	1.1.1.8 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas	0.85	61.0	6.92e-01	73.8%	98.2%
3934729	1.1.1.3 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP	0.85	70.0	7.39e-01	95.0%	96.0%
3773238	1.1.1.6 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease	0.84	71.0	7.38e-01	89.4%	94.6%
3924493	1.1.1.8 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas	0.84	54.0	6.57e-01	73.8%	96.8%
3923745	1.1.1.18 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2	0.84	69.0	7.38e-01	88.7%	96.8%
3510736	1.1.1.3 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP	0.83	63.0	7.00e-01	83.0%	95.7%
3926561	1.1.1.8 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas	0.83	66.0	7.14e-01	89.4%	96.7%
3821648	1.1.1.17 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP_2	0.83	68.0	7.27e-01	86.5%	96.8%
3935726	1.1.1.18 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2	0.82	60.0	6.62e-01	74.5%	94.7%
3925599	1.1.1.0 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease	0.82	70.0	7.09e-01	88.7%	93.6%
3737912	1.1.1.13 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease › Peptidase_A2_2	0.82	55.0	6.54e-01	74.5%	97.0%
5032263	1.1.1.8 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas	0.82	60.0	6.24e-01	75.2%	94.6%
3933581	1.1.1.3 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP	0.82	61.0	6.90e-01	83.0%	99.1%
3461051	1.1.1.8 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas	0.82	67.0	7.17e-01	86.5%	96.8%
3934416	1.1.1.17 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP_2	0.82	59.0	6.36e-01	87.9%	86.7%
3337491	1.1.2.29 ↗	beta barrels › cradle loop barrel › RIFT-related › double psi › RVP	0.82	57.0	6.60e-01	83.0%	96.2%
3934130	1.1.1.0 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease	0.81	69.0	7.20e-01	89.4%	95.4%
3782336	1.1.1.18 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2	0.81	70.0	7.36e-01	100.0%	98.5%
3658254	1.1.1.0 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease	0.81	54.0	6.39e-01	84.4%	96.0%
3249073	1.1.1.18 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2	0.81	64.0	6.97e-01	87.9%	97.5%
4494100	1.1.1.8 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas	0.81	59.0	6.20e-01	75.2%	85.2%
3939777	1.1.1.0 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease	0.80	65.0	6.93e-01	89.4%	96.0%
3912599	1.1.1.8 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas	0.80	65.0	7.03e-01	87.9%	97.5%
3833862	1.1.1.0 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease	0.80	61.0	6.78e-01	81.6%	96.5%
3631178	1.1.1.30 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease › PF30863	0.80	65.0	6.55e-01	83.7%	87.1%
3972732	1.1.1.8 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas	0.80	60.0	6.28e-01	81.6%	84.5%
3927612	1.1.1.17 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP_2	0.80	60.0	6.66e-01	83.0%	95.7%
5032197	1.1.1.18 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2	0.80	60.0	6.73e-01	77.3%	99.1%
4933116	1.1.1.8 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas	0.80	60.0	6.63e-01	78.0%	96.5%
3924552	1.1.1.8 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas	0.80	61.0	6.60e-01	83.0%	92.5%
4993154	1.1.1.0 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease	0.80	58.0	6.12e-01	75.2%	87.5%
5031162	1.1.1.0 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease	0.79	62.0	6.83e-01	83.7%	99.1%
3262861	1.1.1.18 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2	0.79	59.0	6.46e-01	84.4%	93.9%
3366156	1.1.1.0 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease	0.79	64.0	6.94e-01	85.8%	99.2%
3970790	1.1.1.0 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease	0.79	59.0	6.33e-01	81.6%	88.7%
5032212	1.1.1.18 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2	0.79	58.0	6.03e-01	76.6%	94.0%
3937611	1.1.1.17 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP_2	0.79	57.0	6.42e-01	86.5%	95.5%
3927455	1.1.1.0 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease	0.78	66.0	6.94e-01	87.9%	96.9%
3513377	1.1.1.18 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2	0.78	56.0	6.42e-01	87.2%	99.0%
3672734	1.1.1.19 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease › Pol_BBD	0.78	59.0	6.48e-01	83.0%	95.7%
3932485	1.1.1.8 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas	0.78	61.0	6.71e-01	82.3%	99.1%
5023444	1.1.1.5 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease › Zn_protease	0.77	58.0	6.56e-01	86.5%	99.1%
3932187	1.1.1.0 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease	0.77	57.0	6.42e-01	87.9%	97.3%
5030532	1.1.1.8 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas	0.77	58.0	6.41e-01	78.0%	97.4%
3936605	1.1.1.18 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2	0.77	54.0	6.09e-01	72.3%	94.5%
3926190	1.1.1.8 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas	0.77	60.0	5.72e-01	83.0%	71.2%
3931343	1.1.1.18 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2	0.76	56.0	6.20e-01	86.5%	93.0%
3931849	1.1.1.18 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2	0.76	60.0	6.32e-01	83.0%	91.2%
3929267	1.1.1.0 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease	0.76	54.0	5.88e-01	86.5%	85.8%
3691719	1.1.1.0 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease	0.75	55.0	6.32e-01	74.5%	100.0%
3437522	1.1.1.19 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease › Pol_BBD	0.74	59.0	6.24e-01	85.1%	94.4%
3507687	1.1.1.14 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease › DUF1758	0.73	61.0	6.38e-01	87.9%	98.5%
3724349	1.1.1.18 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2	0.70	60.0	6.10e-01	90.1%	96.4%
3815764	1.1.1.19 ↗	beta barrels › cradle loop barrel › RIFT-related › acid protease › Pol_BBD	0.69	56.0	5.92e-01	91.5%	96.0%
4344420	4263.2.1.0 ↗	a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain	0.69	25.0	3.47e-01	88.7%	62.7%
4965852	330.7.1.2 ↗	a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin	0.57	26.0	3.26e-01	87.9%	70.0%
3493400	220.1.1.22 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C	0.54	29.0	3.24e-01	89.4%	64.8%
3896484	220.1.1.7 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS	0.54	30.0	3.28e-01	89.4%	62.5%
3935357	220.1.1.0 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like	0.50	28.0	2.99e-01	88.7%	60.0%

D2 high residues 400-479

PDB

Domain cluster: rep: polyprotein,_partial__YP_010085997__Schefflera_ringspot_virus__2169729__D61-133

D3 high residues 483-537_585-685

PDB

Domain cluster: rep: polyprotein__YP_002916057__Sweet_potato_badnavirus_B__647294__D493-623

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF17917.8 best	RT_RNaseH	67.7	1.20e-18	85.9%	99.1%
PF17919.8	RT_RNaseH_2	31.0	3.00e-07	39.1%	50.0%

D4 medium residues 149-186_259-293_315-396

PDB

Domain cluster: rep: IMGVR_UViG_3300021288_000040-3300021288-Ga0214511_10009611__D472-499_578-609_637-721

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00078.33 best	RVT_1	54.5	2.00e-14	52.9%	43.0%

D5 medium residues 187-258_294-314

PDB

Domain cluster: rep: pol_protein,_partial__YP_002308474__Simian_T-cell_lymphotropic_virus_6__481147__D16-81_108-143