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reverse_transcriptase

Euk-Vir

Human_immunodeficiency_virus_1

reverse_transcriptase__YP_001856242__Human_immunodeficiency_virus_1__11676

Identity

Accession:
YP_001856242 ↗
Protein ID:
reverse_transcriptase
Kingdom:
euk

Quality

85.8 mean pLDDT

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 28-91_115-154
PDB
Domain cluster: rep: pol_protein,_partial__YP_002308474__Simian_T-cell_lymphotropic_virus_6__481147__D16-81_108-143
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00078.33 best RVT_1 33.6 5.00e-08 42.3% 23.5%
D2 high residues 97-112_158-228
PDB
Domain cluster: rep: hypothetical_protein_2__YP_009345057__Xinzhou_nematode_virus_7__1923775__D238-258_337-401
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00078.33 best RVT_1 42.1 1.30e-10 93.1% 32.0%
D3 high residues 315-416
PDB
Domain cluster: rep: p15NC-p14PR-p95RT_IN__NP_955619__Human_T-cell_leukemia_virus_type_I__11908__D551-648
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06815.20 best RVT_connect 155.3 5.80e-46 97.1% 97.1%
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1c9rA04 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.89 81.0 7.98e-01 95.1% 90.7%
3u3gA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.76 68.0 6.02e-01 95.1% 84.3%
2d0bA02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.76 64.0 4.95e-01 91.2% 62.6%
8b0qA01 3.30.420.340 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › UvrC, RNAse H endonuclease domain 0.75 65.0 5.38e-01 93.1% 57.4%
2k49A00 2.30.29.80 Mainly Beta › Roll › PH-domain like › 0.69 47.0 4.52e-01 70.6% 94.9%
2ap1A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.69 60.0 5.39e-01 94.1% 74.8%
2qm1B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.69 60.0 5.25e-01 95.1% 75.0%
2w40A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.69 59.0 4.42e-01 94.1% 94.9%
1z05A02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.68 58.0 5.07e-01 93.1% 70.1%
2hoeA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.68 58.0 5.13e-01 95.1% 73.5%
1sz2A02 3.40.367.20 Alpha Beta › 3-Layer(aba) Sandwich › Hexokinase; domain 1 › 0.66 56.0 4.53e-01 93.1% 86.5%
2w35A00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.66 56.0 4.36e-01 93.1% 45.7%
4v19S00 3.30.420.80 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribosomal protein S11/S14 0.66 56.0 5.08e-01 95.1% 85.3%
5nckA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.66 56.0 5.55e-01 92.2% 99.0%
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.66 38.0 4.46e-01 89.2% 86.4%
6n9aB02 3.30.420.200 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.66 38.0 4.47e-01 92.2% 84.1%
3mcpA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.65 56.0 5.44e-01 95.1% 97.3%
3vpzA02 3.40.367.20 Alpha Beta › 3-Layer(aba) Sandwich › Hexokinase; domain 1 › 0.65 54.0 4.40e-01 93.1% 86.5%
3h1qA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.65 58.0 5.09e-01 100.0% 71.9%
4o5fA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.64 47.0 4.35e-01 93.1% 60.3%
3htvA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.64 56.0 5.44e-01 96.1% 98.2%
2f9wA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.63 46.0 4.25e-01 91.2% 59.5%
2aa4A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.63 52.0 4.76e-01 91.2% 74.5%
1xc3A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.62 52.0 5.22e-01 91.2% 98.1%
3bzcA03 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.61 50.0 4.69e-01 92.2% 71.1%
7r8iA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.61 53.0 4.21e-01 98.0% 50.7%
1hjrA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.60 51.0 4.39e-01 91.2% 63.3%
1oypA01 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.60 52.0 4.15e-01 97.1% 84.6%
3psfA04 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.60 51.0 4.37e-01 93.1% 62.8%
3h6eB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.60 51.0 5.24e-01 95.1% 98.0%
3thxB02 3.30.420.110 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › MutS, connector domain 0.60 47.0 4.10e-01 93.1% 55.9%
3wxmB02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.59 49.0 4.70e-01 92.2% 77.9%
4dkwA00 3.30.420.280 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.59 51.0 4.18e-01 100.0% 51.0%
3ll3B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.59 49.0 3.79e-01 94.1% 95.9%
6mzoA01 3.40.50.11970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 43.0 4.08e-01 81.4% 90.5%
2lmcB00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.56 30.0 3.77e-01 89.2% 86.9%
6pogA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 39.0 3.93e-01 72.5% 93.1%
3jr7A03 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.55 44.0 4.24e-01 90.2% 84.6%
3zyzA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 38.0 3.49e-01 71.6% 97.7%
1zxtA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 30.0 3.67e-01 73.5% 88.5%
3jclA01 2.60.120.960 Mainly Beta › Sandwich › Jelly Rolls › Spike glycoprotein, N-terminal domain 0.54 36.0 2.58e-01 97.1% 23.7%
1qsmD00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 44.0 3.89e-01 91.2% 90.8%
1bebA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 43.0 3.85e-01 92.2% 78.8%
2mqdA00 3.30.1460.60 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.52 31.0 2.96e-01 92.2% 49.6%
3laxA00 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.52 38.0 3.83e-01 77.5% 83.0%
2i0rA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 40.0 2.81e-01 83.3% 38.7%
3ewaA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 45.0 3.40e-01 96.1% 53.0%
3s6jA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.50 40.0 3.59e-01 98.0% 58.9%
ECOD (81)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1322782 2484.5.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RVT_connect 0.93 89.0 8.03e-01 100.0% 77.3%
2153195 2484.5.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RVT_connect 0.89 84.0 8.00e-01 99.0% 89.6%
3924494 2484.5.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH 0.81 74.0 7.12e-01 99.0% 100.0%
3935434 2484.5.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH 0.80 73.0 6.72e-01 99.0% 89.2%
3355734 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.80 68.0 6.72e-01 91.2% 98.1%
3460760 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.79 69.0 5.97e-01 94.1% 80.6%
3822302 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.79 68.0 6.03e-01 93.1% 78.6%
3836840 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.79 72.0 6.30e-01 98.0% 87.6%
3375711 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.78 62.0 6.53e-01 83.3% 94.4%
3337433 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.77 58.0 6.46e-01 79.4% 100.0%
3810495 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.76 63.0 6.37e-01 87.3% 100.0%
3351473 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.76 54.0 6.06e-01 74.5% 95.0%
3366565 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.75 64.0 6.27e-01 91.2% 88.2%
3961936 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.75 50.0 4.70e-01 73.5% 56.0%
3938447 2484.1.1.4 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H 0.73 63.0 5.33e-01 93.1% 75.2%
3934739 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.71 57.0 5.78e-01 84.3% 88.0%
3435087 2484.1.1.114 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Med13_C 0.70 60.0 5.80e-01 93.1% 96.5%
5019748 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.70 59.0 5.56e-01 91.2% 84.2%
4985600 896.1.1.0 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.69 43.0 4.81e-01 75.5% 80.0%
3627561 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.68 59.0 5.17e-01 94.1% 80.7%
4010765 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.68 58.0 5.40e-01 91.2% 76.0%
3975477 2484.1.1.8 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.68 60.0 5.24e-01 95.1% 73.3%
3979131 2484.1.1.8 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.68 60.0 5.05e-01 95.1% 67.3%
5043517 2484.1.1.43 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.68 58.0 4.73e-01 93.1% 53.7%
4442902 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.68 58.0 5.42e-01 92.2% 77.6%
3605420 2484.1.1.26 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Piwi 0.68 58.0 4.32e-01 93.1% 40.0%
4005164 2484.1.1.8 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.67 59.0 4.13e-01 96.1% 33.8%
4933414 2484.1.1.8 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.67 58.0 5.66e-01 93.1% 98.2%
3964959 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.67 58.0 4.77e-01 100.0% 51.9%
3278013 2484.1.1.8 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.67 57.0 5.28e-01 92.2% 83.1%
4075924 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.67 57.0 5.49e-01 92.2% 81.7%
11226 2484.1.1.8 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.67 59.0 5.43e-01 95.1% 85.2%
4022865 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.67 59.0 4.46e-01 95.1% 46.4%
3990858 2484.1.1.114 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Med13_C 0.67 58.0 4.15e-01 95.1% 44.1%
3627968 2484.1.1.114 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Med13_C 0.67 57.0 4.42e-01 95.1% 58.5%
5026433 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.67 52.0 5.27e-01 91.2% 85.0%
4858098 2484.1.1.84 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC_1 0.66 48.0 4.51e-01 74.5% 81.8%
3220848 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.66 57.0 5.16e-01 94.1% 73.6%
4502261 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.66 56.0 5.23e-01 92.2% 76.8%
3271756 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.66 55.0 4.58e-01 93.1% 52.6%
3311061 2484.1.1.165 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.66 59.0 4.53e-01 100.0% 45.1%
3223921 2484.1.1.259 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF26742 0.65 48.0 5.02e-01 76.5% 98.9%
3609310 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.65 55.0 5.07e-01 93.1% 84.4%
3743221 2484.1.1.114 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Med13_C 0.65 57.0 4.19e-01 97.1% 43.6%
3187356 2484.1.1.223 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27036 0.65 58.0 4.74e-01 99.0% 65.3%
3490628 2484.1.1.7 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ribosomal_S11 0.65 56.0 5.16e-01 94.1% 77.5%
3310760 2484.1.1.7 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ribosomal_S11 0.64 55.0 5.08e-01 94.1% 83.8%
4204619 2484.1.1.48 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II 0.64 49.0 4.20e-01 95.1% 50.6%
4135922 2484.1.1.48 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II 0.64 48.0 4.16e-01 95.1% 50.6%
4025734 2006.1.6.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.64 55.0 4.30e-01 95.1% 90.2%
3611339 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.64 43.0 4.63e-01 90.2% 82.4%
4995973 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.64 54.0 4.38e-01 92.2% 58.4%
3613468 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.63 36.0 4.30e-01 85.3% 87.7%
5044375 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.63 54.0 4.13e-01 94.1% 71.9%
4521611 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 43.0 4.21e-01 93.1% 63.5%
4979515 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 53.0 4.69e-01 92.2% 70.7%
3504143 2484.1.1.230 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27073 0.63 55.0 4.81e-01 99.0% 67.5%
4948092 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.62 43.0 4.14e-01 94.1% 61.7%
3939717 2484.1.1.72 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › YqgF 0.62 54.0 4.37e-01 95.1% 60.0%
5057914 2484.1.1.330 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF460 0.61 43.0 3.79e-01 95.1% 47.5%
3782631 2484.8.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Separase pseudo-protease domain (PPD) › Separase pseudo-protease domain (PPD) › Peptidase_C50 0.61 53.0 3.90e-01 98.0% 90.3%
3517477 2484.1.1.230 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27073 0.61 52.0 5.25e-01 98.0% 93.3%
3243863 2484.1.1.72 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › YqgF 0.60 52.0 4.22e-01 95.1% 55.5%
3518268 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 39.0 3.61e-01 78.4% 50.4%
3739414 330.1.1.3 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Dicer_dimer 0.60 42.0 4.18e-01 88.2% 70.5%
3758614 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 52.0 3.04e-01 100.0% 23.2%
3415287 2484.1.1.120 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_4 0.59 52.0 4.19e-01 100.0% 71.2%
3165271 207.2.1.60 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta-sol_PIC_HAP1_IgA0_2nd 0.59 50.0 3.26e-01 95.1% 30.6%
3712058 2484.1.1.72 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › YqgF 0.58 49.0 4.18e-01 91.2% 62.5%
3597605 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 49.0 4.14e-01 93.1% 60.0%
4980477 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 48.0 4.40e-01 92.2% 77.0%
3937390 2484.8.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Separase pseudo-protease domain (PPD) › Separase pseudo-protease domain (PPD) 0.57 51.0 3.82e-01 99.0% 94.5%
3618833 2484.8.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Separase pseudo-protease domain (PPD) › Separase pseudo-protease domain (PPD) 0.57 50.0 3.87e-01 99.0% 92.1%
3701860 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 45.0 4.69e-01 88.2% 92.6%
3711489 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 47.0 3.82e-01 94.1% 50.3%
3455348 3696.1.1.0 ↗ a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related 0.55 40.0 4.08e-01 77.5% 93.0%
3286459 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 45.0 3.76e-01 96.1% 55.9%
11056 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.53 42.0 3.68e-01 84.3% 86.0%
3929385 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.52 41.0 3.10e-01 86.3% 45.8%
3931704 220.1.1.20 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.51 35.0 3.51e-01 71.6% 87.3%
3865191 220.1.1.61 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C_FAK1 0.51 37.0 3.65e-01 100.0% 71.8%
D4 high residues 429-553
PDB
Domain cluster: rep: polyprotein__YP_002916057__Sweet_potato_badnavirus_B__647294__D493-623
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00075.31 best RNase_H 113.4 1.40e-32 94.4% 94.3%
D5 medium residues 229-314
PDB
Domain cluster: rep: p66_subunit__NP_705927__Human_immunodeficiency_virus_1__11676__D252-315
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06817.20 best RVT_thumb 86.4 1.30e-24 74.4% 98.5%