reverse_transcriptase

Euk-Vir

Soybean_Putnam_virus

reverse_transcriptase__YP_006607892__Soybean_Putnam_virus__1221449

Identity

81.0 mean pLDDT

Pararnavirae› Artverviricota› Revtraviricetes› Ortervirales› Caulimoviridae› Caulimovirus› Soybean_Putnam_virus

TaxID: 1221449

View cluster (17 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 49-198

PDB

Domain cluster: rep: NC_029048.2__YP_009221738.1__PHICD211_20135__00153__D2-127

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02160.20 best	Peptidase_A3	165.7	1.40e-48	100.0%	72.1%
PF08284.17	RVP_2	25.4	1.50e-05	69.3%	69.1%

D2 high residues 481-555

PDB

Domain cluster: rep: polyprotein,_partial__YP_010085997__Schefflera_ringspot_virus__2169729__D61-133

D3 high residues 562-695

PDB

Domain cluster: rep: polyprotein__YP_002916057__Sweet_potato_badnavirus_B__647294__D493-623

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF17917.8 best	RT_RNaseH	88.8	3.30e-25	82.1%	98.1%
PF17919.8	RT_RNaseH_2	60.5	2.00e-16	59.7%	77.0%

D4 medium residues 199-254

PDB

D5 medium residues 255-340_374-400

PDB

Domain cluster: rep: pol_protein,_partial__YP_002308474__Simian_T-cell_lymphotropic_virus_6__481147__D16-81_108-143

D6 medium residues 341-373_401-475

PDB

Domain cluster: rep: IMGVR_UViG_3300021288_000040-3300021288-Ga0214511_10009611__D472-499_578-609_637-721

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00078.33 best	RVT_1	71.1	1.70e-19	69.4%	40.0%