rh139

Euk-Vir

Macacine_betaherpesvirus_3

rh139__YP_068230__Macacine_betaherpesvirus_3__47929

Identity

85.7 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Cytomegalovirus› macacine_betaherpesvirus_3

TaxID: 47929

View cluster (61 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-140

PDB

Domain cluster: rep: helicase-primase_subunit__YP_004940263__Saimiriine_betaherpesvirus_4__1535247__D1-152

D2 medium residues 141-153_175-316

PDB

Domain cluster: rep: ORF31__NP_733884__Callitrichine_gammaherpesvirus_3__106331__D132-145_190-351

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03324.21 best	Herpes_HEPA	77.7	9.90e-22	55.5%	97.8%

D3 medium residues 351-406_461-551

PDB

Domain cluster: rep: helicase-primase_subunit__YP_004940263__Saimiriine_betaherpesvirus_4__1535247__D346-536

D4 medium residues 407-460

PDB

Domain cluster: representative

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
7uuim02	1.10.1580.10	Mainly Alpha › Orthogonal Bundle › Conserved Hypothetical Protein Ylqf; Chain: A; domain 2 ›	0.64	45.0	4.01e-01	75.9%	81.5%
3ckdA02	1.20.58.360	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Shigella T3SS effector IpaH defines	0.60	47.0	3.63e-01	87.0%	61.3%
3u9jA00	1.20.120.520	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like	0.57	46.0	3.51e-01	100.0%	65.0%
5c5dD00	3.40.50.1970	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.57	47.0	3.51e-01	100.0%	77.4%
3slgC02	3.90.25.10	Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1	0.56	45.0	3.81e-01	88.9%	59.8%
3e3vA03	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.56	40.0	4.02e-01	90.7%	75.0%
7w3rB01	3.90.70.10	Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases	0.54	43.0	2.83e-01	100.0%	48.0%
3mcfA00	3.90.79.10	Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase	0.52	45.0	3.43e-01	100.0%	84.6%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5068187	632.11.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like	0.60	45.0	4.11e-01	81.5%	85.1%
5072106	873.1.1.0 ↗	a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain	0.57	45.0	3.12e-01	100.0%	23.4%
3909490	109.1.1.16 ↗	alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C_6	0.51	40.0	2.85e-01	87.0%	61.8%
5011535	2006.1.1.1 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase	0.50	38.0	2.54e-01	85.2%	40.9%

D5 medium residues 552-601_636-724

PDB

Domain cluster: rep: E102__YP_007016498__Murid_betaherpesvirus_8__1261657__D578-728