rh40

Euk-Vir

Macacine_betaherpesvirus_3

rh40__YP_068134__Macacine_betaherpesvirus_3__47929

Identity

77.7 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Cytomegalovirus› macacine_betaherpesvirus_3

TaxID: 47929

View cluster (80 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 38-135

PDB

Domain cluster: rep: Cy40__YP_009337474__Cynomolgus_cytomegalovirus__1919083__D38-135

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02393.22 best	US22	56.6	3.90e-15	100.0%	77.4%

D2 high residues 148-277

PDB

Domain cluster: representative

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1dq3A02	3.30.160.90	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain ›	0.63	28.0	3.55e-01	88.5%	69.7%
1ylxA00	3.30.70.1480	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like	0.59	43.0	4.79e-01	78.5%	100.0%
3dueA00	3.40.1420.30	Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy ›	0.55	39.0	3.98e-01	73.1%	89.8%
1v5rA00	3.30.920.20	Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Gas2-like domain	0.53	33.0	3.80e-01	76.9%	83.5%
2xepB01	3.10.450.280	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.50	39.0	4.11e-01	80.8%	100.0%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5063537	4.1.1.13 ↗	beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd	0.62	30.0	4.01e-01	71.5%	93.3%
3424085	5.1.3.118 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3	0.56	45.0	3.31e-01	85.4%	93.2%
3668377	5.1.4.1 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40	0.56	45.0	3.04e-01	86.9%	53.5%
3601003	5.1.4.0 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed	0.54	45.0	3.04e-01	90.0%	98.0%
1843010	331.19.1.1 ↗	a+b two layers › TBP-like › Toxin RnlA N-terminal domains › Toxin RnlA N-terminal domains › RnlA_toxin	0.52	28.0	3.43e-01	83.8%	82.5%
5048065	295.1.1.0 ↗	a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain	0.52	28.0	3.16e-01	81.5%	66.0%
3495848	5.1.4.12 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema	0.50	42.0	2.89e-01	92.3%	90.2%