rh43

Euk-Vir

Macacine_betaherpesvirus_3

rh43__YP_068137__Macacine_betaherpesvirus_3__47929

Identity

73.5 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Cytomegalovirus› macacine_betaherpesvirus_3

TaxID: 47929

View cluster (28 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 249-395

PDB

Domain cluster: rep: tegument_protein_UL25__YP_004940051__Aotine_betaherpesvirus_1__50290__D247-382

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04637.17 best	Herpes_pp85	26.7	2.40e-06	82.3%	17.9%

D2 medium residues 166-248

PDB

Domain cluster: rep: tegument_protein_UL25__YP_004940051__Aotine_betaherpesvirus_1__50290__D159-246

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04637.17 best	Herpes_pp85	27.9	1.10e-06	100.0%	14.9%

D3 medium residues 399-482

PDB

Domain cluster: rep: tegument_protein_UL25__YP_004940051__Aotine_betaherpesvirus_1__50290__D389-454

D4 medium residues 483-576

PDB

Domain cluster: rep: tegument_protein_UL25__YP_004936002__Cercopithecine_betaherpesvirus_5__50292__D469-546

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2yxdA00	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.55	37.0	3.06e-01	71.3%	92.7%
2e8eA00	3.30.300.20	Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain	0.53	28.0	2.49e-01	76.6%	37.1%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3899483	3226.1.1.3 ↗	alpha complex topology › Uracil Transporter UraA › Uracil Transporter UraA › Uracil Transporter UraA › HCO3_cotransp	0.55	45.0	2.89e-01	94.7%	76.7%
3703529	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.55	38.0	2.87e-01	74.5%	94.8%
4931347	5001.1.1.12 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Heliorhodopsin	0.55	39.0	2.93e-01	76.6%	61.1%
3370065	309.1.2.0 ↗	a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › ThrRS/AlaRS editing domain	0.53	24.0	2.32e-01	92.6%	33.9%
3576850	3937.1.1.2 ↗	alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin	0.52	37.0	2.68e-01	76.6%	60.0%