←Back to structures

rh59

Euk-Vir

Macacine_betaherpesvirus_3

rh59__YP_068153__Macacine_betaherpesvirus_3__47929

Identity

Accession:: YP_068153 ↗
Protein ID:: rh59
Kingdom:: euk

Quality

73.6 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Cytomegalovirus› macacine_betaherpesvirus_3

TaxID: 47929

Cluster

View cluster (28 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 25-91_249-317

PDB

Domain cluster: rep: hypothetical_protein_MRV_0031__YP_009344858__Murine_roseolovirus__1940555__D9-97_251-349

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04637.17 best	Herpes_pp85	57.3	1.40e-15	53.7%	14.0%
PF04637.17	Herpes_pp85	59.9	2.20e-16	49.3%	12.2%

D2 high residues 94-246

PDB

Domain cluster: rep: tegument_protein_UL25__YP_004940051__Aotine_betaherpesvirus_1__50290__D247-382

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04637.17 best	Herpes_pp85	99.4	2.30e-28	100.0%	28.6%

D3 medium residues 388-469

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04637.17 best	Herpes_pp85	57.5	1.20e-15	100.0%	14.9%

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1l3iA00	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.59	40.0	3.15e-01	70.7%	75.7%
4p1mB01	3.30.160.880	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Cell division protein ZapA protomer, N-terminal domain	0.54	24.0	3.13e-01	80.5%	73.3%
1kyfA01	2.60.40.1230	Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain	0.53	36.0	3.04e-01	70.7%	73.9%
3h4rA00	3.90.320.10	Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A ›	0.53	38.0	2.93e-01	79.3%	86.3%
4ivkA00	3.40.710.10	Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily	0.52	41.0	2.67e-01	86.6%	52.7%
3p9aF00	1.10.132.80	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 ›	0.52	44.0	3.87e-01	100.0%	62.7%

ECOD (21)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1828346	1063.1.1.1 ↗	alpha complex topology › Tegument protein U14 › Tegument protein U14 › Tegument protein U14 › Herpes_pp85	0.77	64.0	3.99e-01	95.1%	16.5%
3231554	3937.1.1.2 ↗	alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin	0.60	46.0	3.05e-01	82.9%	50.6%
3238186	3937.1.1.2 ↗	alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin	0.60	45.0	3.06e-01	82.9%	51.9%
3494392	3937.1.1.2 ↗	alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin	0.57	42.0	2.83e-01	81.7%	47.3%
3411686	3136.1.1.1 ↗	extended segments › Gle2-binding sequence (GLEBS) of Nup98 › Gle2-binding sequence (GLEBS) of Nup98 › Gle2-binding sequence (GLEBS) of Nup98 › Nup98_GLEBS	0.57	38.0	4.22e-01	73.2%	95.0%
3740226	5051.1.1.7 ↗	alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Nramp	0.55	41.0	2.64e-01	82.9%	62.2%
4153047	167.1.1.1 ↗	alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal_S7	0.54	37.0	3.10e-01	70.7%	62.0%
4437052	167.1.1.1 ↗	alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal_S7	0.53	36.0	3.03e-01	70.7%	61.3%
5010744	221.1.1.0 ↗	a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like	0.53	29.0	3.30e-01	72.0%	69.2%
5073431	1075.1.1.0 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain	0.53	44.0	2.80e-01	97.6%	38.5%
3482756	5050.1.1.0 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter	0.53	45.0	3.30e-01	100.0%	69.0%
5077468	2004.1.1.30 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C	0.53	37.0	2.83e-01	92.7%	28.4%
4585964	167.1.1.1 ↗	alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal_S7	0.52	36.0	2.82e-01	70.7%	67.4%
4171935	167.1.1.1 ↗	alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal_S7	0.52	36.0	2.92e-01	70.7%	58.1%
4176001	167.1.1.1 ↗	alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal_S7	0.52	36.0	2.95e-01	70.7%	58.5%
4085430	167.1.1.1 ↗	alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal_S7	0.52	35.0	2.93e-01	70.7%	61.8%
3586391	3937.1.1.2 ↗	alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin	0.51	39.0	2.69e-01	82.9%	56.1%
5074130	1075.1.1.0 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain	0.51	43.0	3.17e-01	98.8%	73.3%
4192191	167.1.1.1 ↗	alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal_S7	0.51	34.0	2.88e-01	70.7%	58.1%
3506621	167.1.1.1 ↗	alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal_S7	0.51	34.0	2.88e-01	70.7%	58.1%
4932519	167.1.1.1 ↗	alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal_S7	0.50	35.0	2.75e-01	72.0%	51.8%