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rh60

Euk-Vir

Macacine_betaherpesvirus_3

rh60__YP_068154__Macacine_betaherpesvirus_3__47929

Identity

Accession:: YP_068154 ↗
Protein ID:: rh60
Kingdom:: euk

Quality

82.2 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Cytomegalovirus› macacine_betaherpesvirus_3

TaxID: 47929

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 73-214

PDB

Domain cluster: rep: protein_U95__YP_073826__Human_betaherpesvirus_7__10372__D619-769

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02393.22 best	US22	40.8	3.10e-10	93.7%	87.9%

D2 medium residues 1-66_215-249

PDB

Domain cluster: rep: tegument_protein_UL36__YP_004933790__Cynomolgus_macaque_cytomegalovirus_strain_Ottawa__944969__D1-66_214-239

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02393.22 best	US22	43.4	4.60e-11	58.4%	47.6%

D3 medium residues 264-324

PDB

Domain cluster: representative

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3c18A02	1.20.120.330	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2	0.70	49.0	3.95e-01	73.8%	82.2%
4mhcA01	1.20.58.1780	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.66	49.0	3.32e-01	82.0%	21.6%
2ew2A02	1.10.1040.10	Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	0.65	55.0	4.38e-01	100.0%	97.0%
4ymhD00	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.54	40.0	2.76e-01	82.0%	66.7%
1uouA01	1.20.970.10	Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C	0.51	38.0	3.77e-01	85.2%	88.2%
2ptfB02	1.20.58.290	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121.	0.51	39.0	4.03e-01	88.5%	98.2%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3584894	605.1.1.238 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › CNNM	0.61	43.0	3.78e-01	73.8%	74.4%
3580853	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.61	47.0	4.60e-01	83.6%	100.0%
3492168	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.60	52.0	3.62e-01	100.0%	88.4%
4279089	7094.1.1.3 ↗	alpha bundles › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › OPA1_C	0.60	41.0	3.30e-01	72.1%	95.0%
4374831	101.1.1.282 ↗	alpha arrays › HTH › HTH › Three-helical HTH › DUF222	0.58	43.0	3.51e-01	85.2%	54.1%
4932863	101.1.2.947 ↗	alpha arrays › HTH › HTH › winged helix domain › PF27234	0.58	47.0	4.32e-01	88.5%	83.7%
3625607	109.27.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain	0.58	44.0	4.34e-01	85.2%	92.3%
3994728	7094.1.1.3 ↗	alpha bundles › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › OPA1_C	0.57	45.0	3.38e-01	83.6%	49.3%
3265877	101.1.17.2 ↗	alpha arrays › HTH › HTH › FF domain › FF	0.55	41.0	4.08e-01	80.3%	93.8%
4960514	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.54	39.0	3.37e-01	78.7%	55.0%
3576763	101.1.1.332 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Nucleolin_bd	0.52	35.0	3.48e-01	70.5%	95.4%
3363185	2484.1.1.106 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF659	0.51	41.0	2.58e-01	100.0%	16.9%

D4 medium residues 330-376

PDB