rh89

Euk-Vir

Macacine_betaherpesvirus_3

rh89__YP_068182__Macacine_betaherpesvirus_3__47929

Identity

72.2 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Cytomegalovirus› macacine_betaherpesvirus_3

TaxID: 47929

View cluster (42 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-12_467-553

PDB

Domain cluster: rep: envelope_glycoprotein_B__YP_009342376__Spheniscid_alphaherpesvirus_1__2560777__D566-653

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00606.24 best	Glycoprotein_B	97.8	9.60e-28	98.9%	40.1%

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3fvcA01	2.30.30.1230	Mainly Beta › Roll › SH3 type barrels. ›	0.91	69.0	7.50e-01	97.8%	91.3%
2gumB01	2.30.30.1230	Mainly Beta › Roll › SH3 type barrels. ›	0.89	85.0	8.25e-01	100.0%	93.0%
5ocrA00	2.60.120.200	Mainly Beta › Sandwich › Jelly Rolls ›	0.56	46.0	3.38e-01	92.5%	55.8%
5ocqA00	2.60.120.200	Mainly Beta › Sandwich › Jelly Rolls ›	0.56	47.0	3.43e-01	93.5%	52.0%
4py5A01	3.30.310.10	Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein	0.55	31.0	3.50e-01	81.7%	72.2%
8ep4C01	2.60.120.200	Mainly Beta › Sandwich › Jelly Rolls ›	0.53	43.0	3.16e-01	88.2%	48.2%
3ilfA00	2.60.120.200	Mainly Beta › Sandwich › Jelly Rolls ›	0.53	37.0	2.72e-01	73.1%	79.4%
2jo6A00	2.102.10.10	Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain	0.52	30.0	2.84e-01	89.2%	47.3%
2rh0A01	2.60.40.790	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.50	29.0	3.31e-01	76.3%	79.7%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2488247	4300.1.1.1 ↗	beta complex topology › Viral glycoprotein ectodomain-like › Viral glycoprotein ectodomain-like › Viral glycoprotein ectodomain-like › Glycoprotein_B	0.90	86.0	6.59e-01	100.0%	86.6%
3167809	220.1.1.0 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like	0.53	43.0	3.42e-01	91.4%	49.8%
1295901	319.1.1.3 ↗	beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS	0.52	30.0	2.71e-01	80.6%	37.6%
4980090	319.1.1.0 ↗	beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones	0.52	31.0	3.35e-01	89.2%	68.8%
4950889	319.1.1.0 ↗	beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones	0.52	32.0	3.51e-01	88.2%	77.3%
3586307	319.1.1.3 ↗	beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS	0.51	32.0	2.91e-01	88.2%	45.4%
3420395	5.1.3.118 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3	0.50	41.0	2.87e-01	92.5%	34.8%

D2 high residues 36-47_261-358

PDB

Domain cluster: rep: BALF4__YP_010084703__Lymphocryptovirus_Macaca_pfe-lcl-E3__1716044__D77-88_295-391

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF17417.9 best	Glycoprot_B_PH2	110.7	4.80e-32	88.2%	96.9%

D3 medium residues 13-24_412-466

PDB

Domain cluster: rep: JM12__YP_238315__Macaca_fuscata_rhadinovirus__272551__D450-511

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00606.24 best	Glycoprotein_B	84.2	1.40e-23	95.5%	25.7%

D4 medium residues 52-166

PDB

Domain cluster: rep: envelope_glycoprotein_B__YP_009344884__Murine_roseolovirus__1940555__D81-138_150-207

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF17416.9 best	Glycoprot_B_PH1	117.5	9.10e-34	100.0%	54.3%

D5 medium residues 167-260

PDB

Domain cluster: rep: Cy89__YP_009337505__Cynomolgus_cytomegalovirus__1919083__D227-314_636-647

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF17416.9 best	Glycoprot_B_PH1	91.8	6.80e-26	96.8%	43.3%

D6 medium residues 588-640

PDB