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ribonuclease_HII
Euk-VirPhaeocystis_globosa_virus
ribonuclease_HII__YP_008052440__Phaeocystis_globosa_virus__251749
Identity
- Accession:
- YP_008052440 ↗
- Protein ID:
- ribonuclease_HII
- Kingdom:
- euk
Quality
76.3
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Algavirales›
Phycodnaviridae›
Prymnesiovirus›
Phaeocystis_globosa_virus
TaxID: 251749
Cluster
View cluster (9 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 18-172
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01351.26 best | RNase_HII | 78.4 | 9.80e-22 | 99.4% | 74.9% |
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2etjA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.92 | 69.0 | 6.07e-01 | 100.0% | 56.2% |
| 1ekeA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.85 | 82.0 | 7.88e-01 | 100.0% | 94.2% |
| 1i39A01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.85 | 77.0 | 7.73e-01 | 100.0% | 93.5% |
| 2d0bA02 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.85 | 82.0 | 7.12e-01 | 100.0% | 71.7% |
| 4py5A02 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.84 | 77.0 | 7.06e-01 | 100.0% | 76.4% |
| 3p5jA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.81 | 77.0 | 7.13e-01 | 100.0% | 81.6% |
| 3vn5A02 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.80 | 70.0 | 6.55e-01 | 100.0% | 76.3% |
| 3hrgA02 | 3.30.420.260 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, C-terminal domain | 0.70 | 42.0 | 4.82e-01 | 93.5% | 80.7% |
| 3obwA02 | 3.30.420.60 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 | 0.67 | 45.0 | 5.08e-01 | 91.6% | 89.0% |
| 3wxmB02 | 3.30.420.60 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 | 0.64 | 44.0 | 4.93e-01 | 91.6% | 89.3% |
| 4af1A02 | 3.30.420.60 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 | 0.61 | 45.0 | 4.95e-01 | 94.2% | 95.2% |
| 8oqxA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.60 | 40.0 | 4.57e-01 | 94.2% | 91.2% |
| 3iprA00 | 3.40.50.510 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase system, mannose-type IIA component | 0.60 | 41.0 | 4.29e-01 | 94.2% | 76.6% |
| 2yhaA02 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.60 | 56.0 | 4.84e-01 | 100.0% | 76.0% |
| 1woqA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.59 | 42.0 | 4.37e-01 | 93.5% | 78.7% |
| 2yk4A01 | 3.30.370.20 | Alpha Beta › 2-Layer Sandwich › Barnase; Chain D › | 0.58 | 28.0 | 3.63e-01 | 98.7% | 82.9% |
| 1yvuA04 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.57 | 52.0 | 4.68e-01 | 100.0% | 90.2% |
| 1sazA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.55 | 46.0 | 4.46e-01 | 93.5% | 79.5% |
| 1sazA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.53 | 44.0 | 4.08e-01 | 88.4% | 78.7% |
| 3do6A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 45.0 | 3.62e-01 | 92.3% | 78.7% |
| 3vnaA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.53 | 38.0 | 3.94e-01 | 91.0% | 78.4% |
| 3wuhA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.52 | 42.0 | 4.15e-01 | 86.5% | 99.4% |
| 2hoeA03 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.52 | 42.0 | 4.40e-01 | 88.4% | 97.2% |
| 2w42B01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 33.0 | 3.38e-01 | 91.6% | 64.6% |
| 2a1iA01 | 3.40.50.10130 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 35.0 | 4.01e-01 | 76.8% | 94.9% |
| 7kx9A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.50 | 34.0 | 3.57e-01 | 91.6% | 74.3% |
ECOD (73)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| None | — | 0.95 | 78.0 | 6.52e-01 | 100.0% | 54.6% | |
| None | — | 0.94 | 78.0 | 6.67e-01 | 100.0% | 58.2% | |
| 4417609 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.94 | 78.0 | 6.53e-01 | 100.0% | 55.7% |
| None | — | 0.94 | 79.0 | 7.14e-01 | 100.0% | 68.2% | |
| 4262002 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.92 | 78.0 | 6.32e-01 | 100.0% | 51.9% |
| 4165286 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.92 | 76.0 | 6.75e-01 | 100.0% | 63.3% |
| None | — | 0.90 | 78.0 | 7.07e-01 | 100.0% | 70.3% | |
| 4176554 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.89 | 85.0 | 6.82e-01 | 100.0% | 62.5% |
| 3838396 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.89 | 77.0 | 7.06e-01 | 100.0% | 71.8% |
| 5059859 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.88 | 84.0 | 7.14e-01 | 100.0% | 75.3% |
| 5004347 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.88 | 84.0 | 7.14e-01 | 100.0% | 73.4% |
| 4956142 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.86 | 81.0 | 7.99e-01 | 100.0% | 93.8% |
| 3599190 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.86 | 77.0 | 6.98e-01 | 92.9% | 73.5% |
| 5046769 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.86 | 83.0 | 7.35e-01 | 100.0% | 76.1% |
| 4945436 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.86 | 80.0 | 7.00e-01 | 99.4% | 69.8% |
| 4993672 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.85 | 82.0 | 7.23e-01 | 100.0% | 73.8% |
| 4989427 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.85 | 79.0 | 7.06e-01 | 100.0% | 73.4% |
| 4398538 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.85 | 81.0 | 7.03e-01 | 100.0% | 69.5% |
| 4524222 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.85 | 81.0 | 6.80e-01 | 100.0% | 71.2% |
| 4994572 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.84 | 76.0 | 6.83e-01 | 98.7% | 72.0% |
| 4223327 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.84 | 81.0 | 6.87e-01 | 100.0% | 67.0% |
| 4682851 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.84 | 80.0 | 6.98e-01 | 100.0% | 70.0% |
| 3607891 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.84 | 81.0 | 6.68e-01 | 100.0% | 63.6% |
| 3248200 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.84 | 80.0 | 6.88e-01 | 100.0% | 68.7% |
| 1837475 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.84 | 77.0 | 6.99e-01 | 100.0% | 74.5% |
| 4947312 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.84 | 78.0 | 6.86e-01 | 100.0% | 71.0% |
| 4332144 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.83 | 80.0 | 6.87e-01 | 100.0% | 68.9% |
| 3626299 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.83 | 79.0 | 6.27e-01 | 100.0% | 56.1% |
| 3632192 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.83 | 79.0 | 6.26e-01 | 100.0% | 58.6% |
| 4271759 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.82 | 79.0 | 6.83e-01 | 100.0% | 70.0% |
| 4998267 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.82 | 78.0 | 7.10e-01 | 100.0% | 79.0% |
| 4975324 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.82 | 70.0 | 7.08e-01 | 100.0% | 89.0% |
| 5028451 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.82 | 69.0 | 6.93e-01 | 100.0% | 87.1% |
| 4243829 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.81 | 78.0 | 6.78e-01 | 100.0% | 70.9% |
| 4930141 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.81 | 76.0 | 6.87e-01 | 100.0% | 76.5% |
| 1837658 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.80 | 70.0 | 6.52e-01 | 100.0% | 75.5% |
| 5043207 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.80 | 75.0 | 6.54e-01 | 100.0% | 69.3% |
| 4342890 | 2484.1.1.264 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF3800 | 0.79 | 74.0 | 6.06e-01 | 100.0% | 70.9% |
| 405856 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.78 | 54.0 | 5.90e-01 | 71.0% | 84.4% |
| 4121226 | 2484.1.1.292 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF26630 | 0.76 | 71.0 | 6.02e-01 | 100.0% | 80.8% |
| 5014957 | 2484.1.1.292 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF26630 | 0.75 | 70.0 | 5.94e-01 | 100.0% | 79.6% |
| 3741985 | 2484.1.1.7 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ribosomal_S11 | 0.70 | 46.0 | 5.07e-01 | 88.4% | 82.4% |
| 3618372 | 2484.1.1.99 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Peptidase_A17 | 0.69 | 50.0 | 5.60e-01 | 99.4% | 96.7% |
| 5054866 | 3979.1.1.0 ↗ | a+b four layers › Mre11 nuclease C-terminal domain › Mre11 nuclease C-terminal domain › Mre11 nuclease C-terminal domain | 0.69 | 31.0 | 4.56e-01 | 87.7% | 100.0% |
| 4255201 | 2484.1.1.7 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ribosomal_S11 | 0.68 | 42.0 | 4.84e-01 | 88.4% | 85.5% |
| 5012088 | 2484.1.1.38 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 | 0.68 | 45.0 | 5.15e-01 | 91.6% | 93.6% |
| 3936714 | 2484.1.1.67 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 | 0.67 | 52.0 | 5.43e-01 | 100.0% | 88.3% |
| 4980468 | 2484.1.1.338 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › baeRF_family10 | 0.64 | 47.0 | 5.06e-01 | 92.9% | 90.0% |
| 4314343 | 2484.1.1.38 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 | 0.63 | 45.0 | 4.83e-01 | 92.9% | 86.9% |
| 5068447 | 2484.1.1.38 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 | 0.62 | 47.0 | 5.09e-01 | 93.5% | 94.6% |
| 3923414 | 2484.1.1.26 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Piwi | 0.61 | 57.0 | 4.53e-01 | 100.0% | 75.5% |
| 4980793 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.60 | 38.0 | 4.22e-01 | 96.1% | 78.4% |
| 3644907 | 7590.1.1.2 ↗ | a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Piwi | 0.59 | 34.0 | 4.00e-01 | 76.1% | 81.9% |
| 3945390 | 2010.1.1.3 ↗ | a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › EIIA-man | 0.57 | 38.0 | 4.01e-01 | 94.2% | 74.1% |
| 3312607 | 2007.2.5.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase › Rhodanese | 0.57 | 42.0 | 4.28e-01 | 96.8% | 78.7% |
| 3733618 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.55 | 49.0 | 4.50e-01 | 94.2% | 91.8% |
| 3630231 | 7590.1.1.3 ↗ | a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Piwi,ArgoMid | 0.55 | 39.0 | 3.58e-01 | 91.0% | 56.5% |
| 3583806 | 7590.1.1.6 ↗ | a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › ArgoMid | 0.55 | 39.0 | 3.80e-01 | 91.0% | 66.5% |
| 4443623 | 2484.1.1.21 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › BcrAD_BadFG | 0.54 | 48.0 | 3.91e-01 | 94.2% | 57.1% |
| 4027720 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.54 | 47.0 | 4.38e-01 | 92.9% | 94.9% |
| 4969052 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.53 | 45.0 | 3.56e-01 | 91.6% | 95.8% |
| 4264624 | 2484.1.1.12 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Acetate_kinase | 0.53 | 47.0 | 3.55e-01 | 95.5% | 90.3% |
| 3332111 | 7590.1.1.2 ↗ | a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Piwi | 0.52 | 39.0 | 3.58e-01 | 91.0% | 59.5% |
| 1189153 | 2484.1.1.94 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HypF_C_2 | 0.52 | 44.0 | 3.74e-01 | 91.6% | 91.5% |
| None | — | 0.52 | 45.0 | 3.34e-01 | 94.2% | 46.7% | |
| 3691413 | 7590.1.1.0 ↗ | a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs | 0.52 | 38.0 | 3.54e-01 | 90.3% | 60.5% |
| 4552243 | 2003.1.5.30 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_7 | 0.52 | 44.0 | 3.35e-01 | 91.6% | 88.0% |
| 5063668 | 2484.1.1.21 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › BcrAD_BadFG | 0.51 | 43.0 | 4.21e-01 | 89.7% | 100.0% |
| 4208424 | 2002.4.1.1 ↗ | a/b barrels › TIM beta/alpha-barrel › Nicotinate/Quinolinate PRTase C-terminal domain-like › Nicotinate/Quinolinate PRTase C-terminal domain-like › NAPRTase | 0.51 | 38.0 | 3.22e-01 | 78.7% | 71.5% |
| 4025028 | 2008.1.1.12 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Rad10 | 0.51 | 36.0 | 3.86e-01 | 75.5% | 86.2% |
| 3194939 | 7590.1.1.2 ↗ | a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Piwi | 0.50 | 38.0 | 3.69e-01 | 92.9% | 69.7% |
| 4243335 | 2004.1.1.201 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_26 | 0.50 | 41.0 | 3.62e-01 | 87.7% | 87.0% |
| 4459913 | 2007.1.19.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › SAT | 0.50 | 41.0 | 3.35e-01 | 88.4% | 95.6% |
D2
medium
residues 179-229
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2etjA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.77 | 68.0 | 4.42e-01 | 98.0% | 23.8% |
| 1pnkA02 | 1.10.287.150 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 35.0 | 3.65e-01 | 92.2% | 80.4% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4398538 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.89 | 68.0 | 4.30e-01 | 88.2% | 18.6% |
| 4271759 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.89 | 66.0 | 4.21e-01 | 86.3% | 18.2% |
| None | — | 0.89 | 66.0 | 4.29e-01 | 86.3% | 20.5% | |
| 3838396 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.82 | 71.0 | 4.60e-01 | 92.2% | 24.6% |
| 4176554 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.82 | 69.0 | 4.19e-01 | 90.2% | 16.7% |
| 3599190 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.81 | 68.0 | 4.47e-01 | 94.1% | 23.5% |
| None | — | 0.80 | 71.0 | 4.51e-01 | 96.1% | 22.2% | |
| 4175479 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.78 | 69.0 | 4.35e-01 | 96.1% | 20.9% |
| None | — | 0.78 | 69.0 | 4.54e-01 | 96.1% | 25.1% | |
| 4297736 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.78 | 68.0 | 4.50e-01 | 94.1% | 26.5% |
| 4165286 | 2484.1.1.16 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_HII | 0.78 | 67.0 | 4.34e-01 | 94.1% | 23.3% |