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ribonuclease_III
Euk-VirNoumeavirus
ribonuclease_III__YP_009345357__Noumeavirus__1955558
Identity
- Accession:
- YP_009345357 ↗
- Protein ID:
- ribonuclease_III
- Kingdom:
- euk
Quality
80.3
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Pimascovirales›
Marseilleviridae›
Marseillevirus›
Noumeavirus
TaxID: 1955558
Cluster
View cluster (30 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-208
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3n3wA00 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.90 | 61.0 | 7.34e-01 | 98.5% | 97.9% |
| 1jfzA00 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.89 | 61.0 | 7.19e-01 | 100.0% | 95.9% |
| 7r97A01 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.87 | 62.0 | 7.27e-01 | 100.0% | 99.3% |
| 3rv0C02 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.86 | 51.0 | 6.12e-01 | 87.8% | 84.7% |
| 2eb1C00 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.85 | 66.0 | 7.27e-01 | 100.0% | 96.4% |
| 1o0wA01 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.83 | 61.0 | 7.03e-01 | 99.5% | 98.7% |
| 1vw4900 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.81 | 61.0 | 6.26e-01 | 100.0% | 80.0% |
| 4oogC01 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.81 | 61.0 | 6.84e-01 | 97.1% | 96.9% |
| 2qvwA04 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.78 | 54.0 | 6.45e-01 | 94.6% | 100.0% |
| 2gslF00 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.72 | 44.0 | 5.57e-01 | 86.8% | 98.4% |
| 1u61A00 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.72 | 44.0 | 5.61e-01 | 85.9% | 99.2% |
| 1vw4501 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.67 | 62.0 | 5.89e-01 | 100.0% | 85.0% |
| 3n5nX01 | 1.10.1670.10 | Mainly Alpha › Orthogonal Bundle › Endonuclease Iii, domain 2 › Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) | 0.64 | 29.0 | 3.69e-01 | 99.0% | 69.4% |
| 2ykgA03 | 1.20.1320.30 | Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › | 0.64 | 27.0 | 3.38e-01 | 81.0% | 60.9% |
| 1l8dA00 | 1.10.287.510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.60 | 22.0 | 3.14e-01 | 76.1% | 67.0% |
| 4evxA00 | 1.10.1740.240 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › | 0.60 | 30.0 | 4.20e-01 | 74.6% | 100.0% |
| 7e84A03 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.53 | 28.0 | 3.50e-01 | 80.5% | 82.9% |
| 3gi7A00 | 1.20.1270.180 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.53 | 27.0 | 3.69e-01 | 77.6% | 96.1% |
| 1yo7A00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.52 | 27.0 | 3.39e-01 | 97.1% | 80.8% |
| 4oydB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.52 | 25.0 | 3.32e-01 | 84.4% | 80.3% |
| 7dl9B02 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.52 | 32.0 | 3.26e-01 | 91.7% | 60.1% |
| 5llmA00 | 1.10.3860.10 | Mainly Alpha › Orthogonal Bundle › Proton glutamate symport protein › Sodium:dicarboxylate symporter | 0.52 | 43.0 | 3.43e-01 | 86.8% | 83.0% |
| 8b70A01 | 1.20.1740.10 | Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I | 0.51 | 43.0 | 3.39e-01 | 87.8% | 91.9% |
| 2of7A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 28.0 | 3.29e-01 | 95.6% | 75.0% |
ECOD (57)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4544296 | 171.1.1.4 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 | 0.92 | 65.0 | 7.64e-01 | 99.5% | 97.3% |
| 4045736 | 171.1.1.4 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 | 0.89 | 63.0 | 7.22e-01 | 100.0% | 93.0% |
| 4284297 | 171.1.1.4 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 | 0.89 | 61.0 | 7.32e-01 | 99.0% | 98.6% |
| 4530473 | 171.1.1.4 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 | 0.89 | 64.0 | 7.38e-01 | 100.0% | 96.8% |
| 4998770 | 171.1.1.4 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 | 0.89 | 60.0 | 7.03e-01 | 99.0% | 93.3% |
| 4506992 | 171.1.1.4 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 | 0.89 | 64.0 | 7.03e-01 | 100.0% | 88.2% |
| 4108975 | 171.1.1.4 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 | 0.88 | 62.0 | 7.18e-01 | 100.0% | 94.8% |
| 4433400 | 171.1.1.4 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 | 0.88 | 63.0 | 6.98e-01 | 100.0% | 88.2% |
| 4070521 | 171.1.1.4 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 | 0.88 | 62.0 | 7.11e-01 | 99.5% | 94.2% |
| 4460349 | 171.1.1.4 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 | 0.88 | 66.0 | 7.31e-01 | 100.0% | 92.9% |
| 2885358 | 171.1.1.0 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like | 0.87 | 62.0 | 7.13e-01 | 100.0% | 95.5% |
| 3964377 | 171.1.1.4 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 | 0.87 | 62.0 | 7.19e-01 | 100.0% | 96.1% |
| 4485206 | 171.1.1.4 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 | 0.87 | 63.0 | 7.16e-01 | 100.0% | 94.4% |
| 3928222 | 171.1.1.1 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 | 0.87 | 62.0 | 7.05e-01 | 100.0% | 93.1% |
| 4437884 | 171.1.1.4 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 | 0.86 | 62.0 | 7.14e-01 | 100.0% | 96.1% |
| 4952426 | 171.1.1.4 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 | 0.86 | 62.0 | 7.29e-01 | 100.0% | 100.0% |
| 4950784 | 171.1.1.4 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 | 0.86 | 60.0 | 7.20e-01 | 97.1% | 100.0% |
| 4209383 | 171.1.1.4 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 | 0.86 | 63.0 | 7.24e-01 | 100.0% | 98.1% |
| 4095489 | 171.1.1.4 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 | 0.86 | 63.0 | 6.86e-01 | 100.0% | 87.4% |
| 4172739 | 171.1.1.4 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 | 0.86 | 62.0 | 7.26e-01 | 99.0% | 100.0% |
| 4319495 | 171.1.1.4 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 | 0.86 | 61.0 | 6.47e-01 | 100.0% | 80.0% |
| 4206901 | 171.1.1.4 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 | 0.85 | 63.0 | 6.91e-01 | 100.0% | 90.0% |
| 4175259 | 171.1.1.4 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 | 0.85 | 63.0 | 6.98e-01 | 100.0% | 91.2% |
| 4674797 | 171.1.1.4 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 | 0.85 | 60.0 | 7.05e-01 | 96.6% | 98.0% |
| 3851507 | 171.1.1.1 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 | 0.84 | 60.0 | 6.51e-01 | 96.6% | 85.5% |
| 4017889 | 171.1.1.1 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 | 0.83 | 61.0 | 6.64e-01 | 97.1% | 87.9% |
| 3307612 | 171.1.1.0 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like | 0.83 | 65.0 | 6.32e-01 | 98.5% | 74.1% |
| 3744100 | 171.1.1.1 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 | 0.83 | 60.0 | 6.82e-01 | 97.1% | 93.8% |
| 3497133 | 171.1.1.0 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like | 0.83 | 57.0 | 6.36e-01 | 96.6% | 86.1% |
| 3277148 | 171.1.1.1 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 | 0.83 | 56.0 | 6.68e-01 | 99.0% | 97.2% |
| 52376 | 171.1.1.0 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like | 0.83 | 61.0 | 6.82e-01 | 100.0% | 92.8% |
| 3683182 | 171.1.1.1 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 | 0.83 | 67.0 | 6.83e-01 | 100.0% | 85.9% |
| 4946621 | 171.1.1.16 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › dsrm | 0.82 | 60.0 | 6.94e-01 | 99.0% | 98.1% |
| 3254232 | 171.1.1.1 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 | 0.82 | 59.0 | 6.63e-01 | 97.6% | 90.9% |
| 3741820 | 171.1.1.4 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 | 0.82 | 60.0 | 6.61e-01 | 100.0% | 92.1% |
| 4022112 | 171.1.1.4 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 | 0.81 | 57.0 | 6.73e-01 | 99.5% | 100.0% |
| 4508353 | 171.1.1.4 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 | 0.81 | 63.0 | 6.97e-01 | 100.0% | 95.9% |
| 3371349 | 171.1.1.1 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 | 0.81 | 67.0 | 7.05e-01 | 100.0% | 94.1% |
| 3739402 | 171.1.1.1 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 | 0.81 | 67.0 | 7.16e-01 | 100.0% | 96.7% |
| 3482432 | 171.1.1.5 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › RM44_endonuclase | 0.80 | 62.0 | 6.17e-01 | 100.0% | 77.1% |
| 3472661 | 171.1.1.5 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › RM44_endonuclase | 0.79 | 56.0 | 6.14e-01 | 88.3% | 85.9% |
| 3459299 | 171.1.1.1 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 | 0.79 | 66.0 | 6.79e-01 | 100.0% | 90.3% |
| 3492890 | 171.1.1.1 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 | 0.79 | 66.0 | 6.62e-01 | 100.0% | 84.8% |
| 1108030 | 171.1.1.1 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 | 0.78 | 57.0 | 6.38e-01 | 98.5% | 92.2% |
| 3508663 | 171.1.1.1 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 | 0.76 | 66.0 | 6.77e-01 | 100.0% | 92.5% |
| 3694814 | 171.1.1.1 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 | 0.76 | 58.0 | 6.00e-01 | 97.6% | 82.6% |
| 3928810 | 171.1.1.9 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3, Ribonucleas_3_3 | 0.75 | 66.0 | 6.67e-01 | 100.0% | 92.5% |
| 3740678 | 171.1.1.1 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 | 0.75 | 59.0 | 5.62e-01 | 100.0% | 71.3% |
| 4427540 | 171.1.1.1 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 | 0.74 | 68.0 | 6.81e-01 | 100.0% | 94.1% |
| 4482046 | 171.1.1.1 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 | 0.74 | 65.0 | 6.76e-01 | 100.0% | 97.9% |
| 4299664 | 171.1.1.1 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 | 0.73 | 52.0 | 5.72e-01 | 96.1% | 87.6% |
| 3794340 | 171.1.1.4 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 | 0.72 | 62.0 | 6.21e-01 | 98.5% | 87.3% |
| 3497871 | 171.1.1.1 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 | 0.72 | 54.0 | 6.10e-01 | 84.9% | 97.5% |
| 3492891 | 171.1.1.1 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 | 0.71 | 57.0 | 5.91e-01 | 95.1% | 88.9% |
| 3728856 | 171.1.1.9 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3, Ribonucleas_3_3 | 0.69 | 66.0 | 6.37e-01 | 100.0% | 95.1% |
| 3579590 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.66 | 20.0 | 2.49e-01 | 76.6% | 39.3% |
| 3453526 | 3930.1.1.0 ↗ | alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase | 0.59 | 27.0 | 3.40e-01 | 81.5% | 68.8% |
D2
high
residues 210-302
Domain cluster:
rep: putative_ribonuclease_III__YP_004347211__Lausannevirus__999883__D209-315