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ribonucleoside-diphosphate_reductase
Euk-VirEuropean_catfish_virus
ribonucleoside-diphosphate_reductase__YP_006347690__European_catfish_virus__84739
Identity
- Accession:
- YP_006347690 ↗
- Protein ID:
- ribonucleoside-diphosphate_reductase
- Kingdom:
- euk
Quality
89.0
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Pimascovirales›
Iridoviridae›
Ranavirus›
European_catfish_virus
TaxID: 84739
Cluster
View cluster (22 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 91-145
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1s2gB00 | 3.40.50.450 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.65 | 44.0 | 3.16e-01 | 100.0% | 23.4% |
| 1mv8A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.64 | 55.0 | 3.79e-01 | 100.0% | 56.9% |
| 1uw0A01 | 3.30.1740.10 | Alpha Beta › 2-Layer Sandwich › first zn-finger domain of poly(adp-ribose) polymerase-1 › Zinc finger, PARP-type | 0.58 | 41.0 | 3.51e-01 | 78.2% | 44.8% |
| 1m3uA00 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.57 | 48.0 | 3.15e-01 | 100.0% | 78.2% |
| 3lfjB00 | 3.40.35.10 | Alpha Beta › 3-Layer(aba) Sandwich › Fructose Permease › Phosphotransferase system, sorbose subfamily IIB component | 0.55 | 47.0 | 3.41e-01 | 100.0% | 33.1% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3636093 | 5054.1.1.6 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH | 0.62 | 42.0 | 3.19e-01 | 72.7% | 57.2% |
| 4073860 | 5086.1.1.67 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › Neurensin | 0.55 | 39.0 | 3.06e-01 | 80.0% | 47.4% |
D2
medium
residues 272-290_313-408
Domain cluster:
rep: hypothetical_protein_FR483_N766L__YP_001426398__Paramecium_bursaria_Chlorella_virus_FR483__399781__D433-559_739-758
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02867.21 best | Ribonuc_red_lgC | 45.8 | 5.10e-12 | 68.7% | 12.6% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1peqA02 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.93 | 89.0 | 5.64e-01 | 100.0% | 38.3% |
| 1xjkA00 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.93 | 90.0 | 5.38e-01 | 100.0% | 26.8% |
| 2wghA00 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.91 | 88.0 | 5.28e-01 | 100.0% | 26.2% |
| 1r1rA02 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.90 | 86.0 | 5.41e-01 | 100.0% | 33.3% |
| 5jvkA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.57 | 43.0 | 3.13e-01 | 93.9% | 28.7% |
| 4aidA02 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.56 | 34.0 | 3.93e-01 | 95.7% | 85.4% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2472944 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.98 | 96.0 | 6.10e-01 | 100.0% | 30.6% |
| 4298539 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.93 | 90.0 | 5.56e-01 | 100.0% | 33.6% |
| 3590466 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.93 | 89.0 | 5.51e-01 | 100.0% | 33.2% |
| 2504767 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.93 | 89.0 | 5.57e-01 | 100.0% | 35.6% |
| 3972491 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.93 | 90.0 | 5.46e-01 | 100.0% | 34.3% |
| 3823652 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.93 | 90.0 | 5.48e-01 | 100.0% | 33.3% |
| 4993733 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.92 | 89.0 | 5.48e-01 | 100.0% | 26.5% |
| 4990406 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.92 | 89.0 | 5.41e-01 | 100.0% | 35.3% |
| 4934525 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.92 | 89.0 | 5.49e-01 | 100.0% | 31.6% |
| 5058546 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.92 | 89.0 | 5.37e-01 | 100.0% | 32.2% |
| 5040104 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.92 | 89.0 | 5.54e-01 | 100.0% | 32.4% |
| 4985374 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.92 | 89.0 | 5.43e-01 | 100.0% | 25.0% |
| 996122 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.92 | 89.0 | 5.42e-01 | 100.0% | 29.9% |
| 4015532 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.92 | 89.0 | 5.43e-01 | 100.0% | 29.6% |
| 4937370 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.92 | 89.0 | 5.37e-01 | 100.0% | 33.2% |
| 3500621 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.92 | 89.0 | 5.50e-01 | 100.0% | 31.0% |
| 5030208 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.92 | 88.0 | 5.32e-01 | 100.0% | 30.4% |
| 4564490 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.91 | 88.0 | 5.41e-01 | 100.0% | 32.3% |
| 4994375 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.91 | 88.0 | 5.52e-01 | 100.0% | 34.6% |
| 4190659 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.91 | 88.0 | 5.23e-01 | 100.0% | 29.1% |
| 3963206 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.91 | 87.0 | 5.40e-01 | 100.0% | 31.4% |
| 4145444 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.91 | 87.0 | 5.41e-01 | 100.0% | 32.2% |
| 4963031 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.91 | 87.0 | 5.28e-01 | 100.0% | 25.8% |
| 3942765 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.90 | 87.0 | 5.38e-01 | 100.0% | 31.9% |
| 3958480 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.89 | 73.0 | 4.90e-01 | 84.3% | 31.4% |
| 4067125 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.87 | 84.0 | 5.25e-01 | 100.0% | 32.0% |
| 4822330 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.87 | 83.0 | 5.32e-01 | 100.0% | 43.9% |
| 5051775 | 2500.1.1.9 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › RNR-II_ins_dom | 0.76 | 71.0 | 4.52e-01 | 100.0% | 23.3% |
| 3613658 | 2484.1.1.4 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H | 0.61 | 44.0 | 3.75e-01 | 74.8% | 93.7% |
| 1933305 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.57 | 43.0 | 3.13e-01 | 93.9% | 28.8% |
| 4990928 | 7531.1.1.1 ↗ | a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase | 0.56 | 51.0 | 3.96e-01 | 99.1% | 80.0% |
| 3673435 | 2002.1.2.4 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › Hypothetical protein Cthe_0052 › Glyco_hydro_14 | 0.55 | 47.0 | 4.36e-01 | 93.9% | 84.8% |
| 4972374 | 7589.1.1.2 ↗ | a/b three-layered sandwiches › YgbK-like › YgbK-like › YgbK-like › NBD_C | 0.53 | 43.0 | 3.70e-01 | 87.8% | 75.5% |
| 5073925 | 2008.1.1.7 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 | 0.52 | 36.0 | 3.31e-01 | 98.3% | 52.3% |
| 3945413 | 2008.1.1.16 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat | 0.52 | 31.0 | 2.74e-01 | 93.9% | 39.4% |
| 5008608 | 2008.1.1.7 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 | 0.51 | 37.0 | 3.45e-01 | 96.5% | 58.7% |
D3
medium
residues 409-477
Domain cluster:
rep: IMGVR_UViG_3300006567_000026-3300006567-Ga0099958_11086953__D213-268
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02867.21 best | Ribonuc_red_lgC | 30.7 | 1.90e-07 | 100.0% | 13.0% |