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ribonucleoside-diphosphate_reductase_large_chain
Euk-VirBrazilian_marseillevirus
ribonucleoside-diphosphate_reductase_large_chain__YP_009238756__Brazilian_marseillevirus__1813599
Identity
- Accession:
- YP_009238756 ↗
- Protein ID:
- ribonucleoside-diphosphate_reductase_large_chain
- Kingdom:
- euk
Quality
82.7
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Pimascovirales›
Marseilleviridae›
Marseillevirus›
Brazilian_marseillevirus
TaxID: 1813599
Cluster
View cluster (25 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 3-67
D2
medium
residues 101-115_144-190_748-834
Domain cluster:
rep: IMGVR_UViG_3300033153_004081-3300033153-Ga0366824_10512072__D20-90_358-461
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02867.21 best | Ribonuc_red_lgC | 67.2 | 1.60e-18 | 59.7% | 16.4% |
| PF00317.27 | Ribonuc_red_lgN | 34.3 | 2.70e-08 | 30.2% | 61.0% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2wghA00 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.97 | 95.0 | 5.91e-01 | 100.0% | 62.3% |
| 1xjkA00 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.92 | 87.0 | 5.48e-01 | 97.3% | 64.7% |
| 1l1lA01 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.82 | 78.0 | 5.19e-01 | 100.0% | 77.1% |
| 5jnmA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.52 | 38.0 | 3.67e-01 | 75.8% | 90.2% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5063882 | 1074.1.1.6 ↗ | alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Ribonuc_red_lgC | 0.93 | 82.0 | 5.86e-01 | 89.3% | 97.5% |
| 4993733 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.93 | 88.0 | 5.66e-01 | 96.6% | 66.0% |
| 4985374 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.93 | 87.0 | 5.59e-01 | 96.6% | 64.7% |
D3
medium
residues 302-368
Domain cluster:
rep: IMGVR_UViG_3300007266_000133-3300007266-Ga0101450_1063125__D8-101
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02867.21 best | Ribonuc_red_lgC | 69.5 | 3.20e-19 | 100.0% | 12.8% |
D4
medium
residues 430-494_692-711
Domain cluster:
rep: MF418016.1__AWD93005.1__HSE3_gp053__00053__D71-138
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1mi8A00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.85 | 75.0 | 6.16e-01 | 100.0% | 56.0% |
| 1am2A00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.84 | 78.0 | 5.97e-01 | 100.0% | 65.7% |
| 4e2tB00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.83 | 78.0 | 6.05e-01 | 100.0% | 53.3% |
| 1dq3A01 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.83 | 77.0 | 5.91e-01 | 100.0% | 52.5% |
| 2cw8A01 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.82 | 76.0 | 5.95e-01 | 100.0% | 51.5% |
| 1at0A00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.82 | 76.0 | 6.26e-01 | 100.0% | 62.1% |
| 4o1sA00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.81 | 75.0 | 5.87e-01 | 100.0% | 50.6% |
| 2lcjA00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.81 | 74.0 | 5.68e-01 | 100.0% | 57.8% |
| 2jmzA01 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.80 | 73.0 | 5.75e-01 | 100.0% | 50.6% |
| 2imzA00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.79 | 74.0 | 6.10e-01 | 100.0% | 60.6% |
| 5o9iA00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.79 | 73.0 | 5.69e-01 | 100.0% | 53.2% |
| 6zgqA01 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.75 | 69.0 | 5.67e-01 | 100.0% | 61.9% |
| 1zdeA00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.75 | 69.0 | 5.51e-01 | 100.0% | 56.9% |
| 1iyjB03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.64 | 32.0 | 2.72e-01 | 82.4% | 28.2% |
| 2f4pA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.63 | 31.0 | 2.70e-01 | 77.6% | 28.4% |
| 2pwyA01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.59 | 39.0 | 4.57e-01 | 74.1% | 100.0% |
| 1i9gA01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.57 | 38.0 | 4.26e-01 | 75.3% | 90.6% |
| 1u1sA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 32.0 | 3.65e-01 | 76.5% | 72.7% |
| 4jonC00 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.57 | 45.0 | 4.05e-01 | 85.9% | 97.5% |
| 1kq1H00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 32.0 | 3.64e-01 | 75.3% | 72.7% |
| 3mb5A01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.56 | 37.0 | 4.25e-01 | 76.5% | 93.5% |
| 2jqjA01 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.56 | 44.0 | 3.81e-01 | 84.7% | 87.7% |
| 4esnA00 | 2.60.320.10 | Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain | 0.55 | 38.0 | 3.99e-01 | 72.9% | 100.0% |
| 3zgzD04 | 2.20.28.290 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.51 | 34.0 | 3.79e-01 | 88.2% | 93.5% |
ECOD (85)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4994372 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.88 | 73.0 | 6.43e-01 | 100.0% | 62.5% |
| 5023539 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.87 | 78.0 | 6.21e-01 | 100.0% | 51.6% |
| 4979631 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.86 | 75.0 | 6.05e-01 | 100.0% | 52.0% |
| 4335483 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.86 | 80.0 | 5.72e-01 | 100.0% | 66.7% |
| 3282306 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.86 | 73.0 | 6.13e-01 | 100.0% | 57.0% |
| 3952464 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.85 | 73.0 | 6.02e-01 | 100.0% | 53.8% |
| 5013038 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.85 | 74.0 | 5.90e-01 | 100.0% | 49.4% |
| 4946209 | 69.1.1.18 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › DNA_topoisoIV | 0.85 | 79.0 | 5.80e-01 | 100.0% | 76.6% |
| 4940451 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.85 | 77.0 | 6.43e-01 | 100.0% | 60.7% |
| 3604113 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.84 | 77.0 | 6.32e-01 | 100.0% | 57.2% |
| 4180552 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.84 | 79.0 | 6.19e-01 | 100.0% | 68.5% |
| 4993437 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.84 | 78.0 | 6.43e-01 | 100.0% | 68.1% |
| 4993480 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.84 | 73.0 | 5.76e-01 | 100.0% | 48.8% |
| 5031634 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.84 | 78.0 | 6.21e-01 | 100.0% | 56.2% |
| 4993853 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.84 | 78.0 | 6.14e-01 | 100.0% | 52.7% |
| 5014854 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.84 | 78.0 | 5.66e-01 | 100.0% | 61.9% |
| 4979524 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.84 | 78.0 | 5.41e-01 | 100.0% | 67.2% |
| 4084747 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.83 | 78.0 | 5.11e-01 | 100.0% | 80.9% |
| 4039971 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.83 | 78.0 | 5.99e-01 | 100.0% | 53.1% |
| 5012957 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.83 | 78.0 | 5.99e-01 | 100.0% | 53.7% |
| 4544734 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.83 | 77.0 | 5.65e-01 | 100.0% | 71.0% |
| 4975578 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.83 | 77.0 | 5.21e-01 | 100.0% | 30.5% |
| 4998392 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.83 | 78.0 | 6.08e-01 | 100.0% | 64.8% |
| 4977673 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.83 | 77.0 | 5.53e-01 | 100.0% | 70.7% |
| 4941327 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.83 | 77.0 | 6.32e-01 | 100.0% | 70.3% |
| 5030213 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.83 | 77.0 | 6.26e-01 | 100.0% | 57.3% |
| 5066389 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.83 | 77.0 | 5.79e-01 | 100.0% | 55.8% |
| 4983458 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.83 | 77.0 | 6.07e-01 | 100.0% | 52.7% |
| 5052154 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.83 | 77.0 | 6.06e-01 | 100.0% | 53.9% |
| 5066163 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.83 | 77.0 | 6.39e-01 | 100.0% | 65.0% |
| 4983616 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.83 | 77.0 | 6.01e-01 | 100.0% | 54.7% |
| 3949431 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.83 | 77.0 | 6.24e-01 | 100.0% | 59.3% |
| 4993454 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.83 | 77.0 | 5.43e-01 | 100.0% | 67.2% |
| 4170121 | 69.1.1.11 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › PT-HINT, Intein_splicing | 0.83 | 77.0 | 6.00e-01 | 100.0% | 50.0% |
| 5031914 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.82 | 76.0 | 5.81e-01 | 100.0% | 51.9% |
| 5012699 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.82 | 76.0 | 5.97e-01 | 100.0% | 69.4% |
| 4999902 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.82 | 76.0 | 6.28e-01 | 100.0% | 61.4% |
| 4975503 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.82 | 77.0 | 5.87e-01 | 100.0% | 57.2% |
| 4993128 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.82 | 76.0 | 6.08e-01 | 100.0% | 60.6% |
| 2524072 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.82 | 77.0 | 5.96e-01 | 100.0% | 52.9% |
| 4487998 | 69.1.1.1 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint | 0.82 | 77.0 | 5.91e-01 | 100.0% | 51.4% |
| 4948016 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.82 | 72.0 | 5.81e-01 | 100.0% | 52.7% |
| 4600944 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.82 | 77.0 | 5.91e-01 | 100.0% | 51.4% |
| 4342207 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.82 | 76.0 | 6.18e-01 | 100.0% | 63.3% |
| 4993927 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.82 | 76.0 | 6.20e-01 | 100.0% | 68.7% |
| 4978263 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.82 | 74.0 | 5.86e-01 | 100.0% | 50.3% |
| 5065032 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.82 | 77.0 | 6.02e-01 | 100.0% | 57.0% |
| 4993813 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.82 | 76.0 | 5.99e-01 | 100.0% | 52.5% |
| 4993581 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.82 | 75.0 | 5.91e-01 | 100.0% | 61.2% |
| 4993808 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.82 | 77.0 | 6.27e-01 | 100.0% | 59.3% |
| 5022295 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.82 | 77.0 | 6.00e-01 | 100.0% | 51.5% |
| 3602706 | 69.1.1.3 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › PT-HINT | 0.82 | 76.0 | 6.35e-01 | 100.0% | 62.3% |
| 4070999 | 69.1.1.1 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint | 0.82 | 76.0 | 6.10e-01 | 100.0% | 58.1% |
| 3604439 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.82 | 75.0 | 5.90e-01 | 100.0% | 50.0% |
| 4680886 | 69.1.1.14 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint_2 | 0.82 | 75.0 | 5.95e-01 | 100.0% | 69.7% |
| 3603108 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.81 | 75.0 | 6.20e-01 | 100.0% | 58.6% |
| 5028788 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.81 | 74.0 | 6.16e-01 | 100.0% | 59.3% |
| 3517362 | 69.1.1.1 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint | 0.81 | 75.0 | 6.20e-01 | 100.0% | 61.8% |
| 182766 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.81 | 74.0 | 5.68e-01 | 100.0% | 57.8% |
| 3518586 | 69.1.1.1 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint | 0.81 | 75.0 | 5.54e-01 | 100.0% | 44.9% |
| 4930433 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.81 | 75.0 | 6.03e-01 | 100.0% | 57.4% |
| 4998394 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.81 | 76.0 | 6.05e-01 | 100.0% | 85.8% |
| 4318313 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.81 | 68.0 | 5.90e-01 | 89.4% | 64.0% |
| 3934143 | 69.1.1.1 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint | 0.81 | 75.0 | 6.22e-01 | 100.0% | 63.6% |
| 5029355 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.81 | 74.0 | 6.06e-01 | 100.0% | 59.3% |
| 3230518 | 69.1.1.1 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint | 0.81 | 74.0 | 5.98e-01 | 100.0% | 63.2% |
| 3511246 | 69.1.1.1 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint | 0.80 | 74.0 | 5.87e-01 | 100.0% | 57.6% |
| 3936057 | 69.1.1.1 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint | 0.80 | 74.0 | 5.98e-01 | 100.0% | 64.3% |
| 3603291 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.80 | 73.0 | 5.68e-01 | 100.0% | 48.0% |
| 4997604 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.80 | 72.0 | 5.60e-01 | 100.0% | 48.2% |
| 5028299 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.80 | 72.0 | 5.80e-01 | 100.0% | 53.5% |
| 4982797 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.79 | 74.0 | 6.05e-01 | 100.0% | 59.3% |
| 4943244 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.79 | 73.0 | 5.72e-01 | 100.0% | 50.6% |
| 4971412 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.79 | 73.0 | 5.60e-01 | 100.0% | 56.1% |
| 5029854 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.79 | 72.0 | 5.32e-01 | 100.0% | 58.1% |
| 4243055 | 69.1.1.1 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint | 0.79 | 73.0 | 5.45e-01 | 100.0% | 46.2% |
| 3215378 | 69.1.1.1 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint | 0.79 | 72.0 | 5.90e-01 | 100.0% | 65.3% |
| 4932851 | 69.1.1.1 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint | 0.79 | 69.0 | 5.82e-01 | 100.0% | 59.3% |
| 4984220 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.78 | 71.0 | 5.79e-01 | 100.0% | 55.5% |
| 4940943 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.78 | 72.0 | 5.62e-01 | 100.0% | 54.1% |
| 4291841 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.77 | 71.0 | 5.63e-01 | 100.0% | 58.8% |
| 4642797 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.77 | 69.0 | 5.52e-01 | 100.0% | 51.2% |
| 3495262 | 69.1.1.1 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint | 0.76 | 71.0 | 5.43e-01 | 100.0% | 59.4% |
| 5052959 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.63 | 40.0 | 4.74e-01 | 81.2% | 98.2% |
| 3243776 | 220.1.1.14 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom | 0.55 | 40.0 | 3.73e-01 | 78.8% | 87.3% |
D5
medium
residues 495-509_572-691
Domain cluster:
rep: IMGVR_UViG_3300045988_178991-3300045988-Ga0495776_136811_42162_44546__D269-361
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14528.12 best | LAGLIDADG_3 | 40.2 | 4.50e-10 | 68.9% | 75.6% |
D6
medium
residues 941-1030
Domain cluster:
rep: ORF61__YP_009173941__Felis_catus_gammaherpesvirus_1__1452540__D602-680
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02867.21 best | Ribonuc_red_lgC | 47.6 | 1.40e-12 | 100.0% | 12.6% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4298539 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.96 | 66.0 | 3.88e-01 | 100.0% | 11.8% |
| 3823652 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.88 | 78.0 | 4.60e-01 | 100.0% | 14.7% |
| 4015532 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.87 | 77.0 | 4.55e-01 | 100.0% | 14.4% |
| 4990406 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.85 | 72.0 | 4.30e-01 | 100.0% | 13.7% |
| 996122 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.85 | 74.0 | 4.40e-01 | 100.0% | 14.3% |
| 4985374 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.82 | 72.0 | 4.27e-01 | 100.0% | 14.4% |
| 4994375 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.80 | 70.0 | 4.27e-01 | 100.0% | 16.6% |
| 4993733 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.80 | 69.0 | 4.14e-01 | 100.0% | 14.9% |
| 4934525 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.80 | 70.0 | 4.17e-01 | 100.0% | 15.2% |
| 3500621 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.77 | 44.0 | 2.71e-01 | 100.0% | 10.0% |
| 3942765 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.77 | 44.0 | 2.66e-01 | 100.0% | 9.6% |
| 3963206 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.77 | 44.0 | 2.66e-01 | 100.0% | 9.5% |
| 4145444 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.77 | 44.0 | 2.66e-01 | 100.0% | 9.7% |
| 4067125 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.75 | 43.0 | 2.64e-01 | 100.0% | 10.0% |
| 3590466 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.74 | 44.0 | 2.66e-01 | 100.0% | 9.7% |
| 4937370 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.71 | 66.0 | 3.91e-01 | 100.0% | 15.7% |
| 4582420 | 327.16.1.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin_N | 0.62 | 46.0 | 4.55e-01 | 78.9% | 87.4% |
| 3986582 | 327.16.1.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin_N | 0.58 | 44.0 | 3.93e-01 | 81.1% | 83.8% |
| 3530014 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.53 | 39.0 | 2.38e-01 | 80.0% | 30.4% |
| 3280234 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.52 | 38.0 | 2.78e-01 | 77.8% | 48.4% |
D7
medium
residues 1031-1098
Domain cluster:
rep: Ribonucleotide_reductase_large_subunit_protein__YP_009143381__Raccoonpox_virus__10256__D684-741
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02867.21 best | Ribonuc_red_lgC | 43.5 | 2.50e-11 | 77.9% | 10.1% |