←Back to structures
ribonucleoside-diphosphate_reductase_large_chain
Euk-VirNoumeavirus
ribonucleoside-diphosphate_reductase_large_chain__YP_009345397__Noumeavirus__1955558
Identity
- Accession:
- YP_009345397 ↗
- Protein ID:
- ribonucleoside-diphosphate_reductase_large_chain
- Kingdom:
- euk
Quality
81.7
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Pimascovirales›
Marseilleviridae›
Marseillevirus›
Noumeavirus
TaxID: 1955558
Cluster
View cluster (25 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 511-646
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14528.12 best | LAGLIDADG_3 | 39.6 | 6.70e-10 | 44.9% | 61.0% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8dy9I01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.83 | 75.0 | 6.43e-01 | 95.6% | 76.7% |
| 3hyiA01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.77 | 69.0 | 6.11e-01 | 95.6% | 69.6% |
| 2m88A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.60 | 28.0 | 3.47e-01 | 70.6% | 68.6% |
| 3jcmH04 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.52 | 29.0 | 3.82e-01 | 88.2% | 97.4% |
| 2cxaA01 | 3.30.70.3550 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Leucyl/phenylalanyl-tRNA-protein transferase, N-terminal domain | 0.51 | 23.0 | 3.04e-01 | 91.2% | 83.3% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4626502 | 242.1.1.6 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_WhiA | 0.72 | 41.0 | 4.34e-01 | 86.8% | 62.4% |
| 4608678 | 320.1.1.0 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain | 0.57 | 25.0 | 3.24e-01 | 90.4% | 68.8% |
| 4004341 | 101.1.2.775 ↗ | alpha arrays › HTH › HTH › winged helix domain › SieB | 0.55 | 31.0 | 3.82e-01 | 83.8% | 88.2% |
| 3443416 | 242.2.1.2 ↗ | a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › tRNA_int_endo_N | 0.55 | 35.0 | 3.93e-01 | 78.7% | 83.7% |
| 3675128 | 304.9.1.20 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_8 | 0.54 | 27.0 | 3.72e-01 | 71.3% | 95.7% |
| 3813612 | 242.2.1.2 ↗ | a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › tRNA_int_endo_N | 0.52 | 33.0 | 3.61e-01 | 78.7% | 77.3% |
| 3793461 | 7516.1.1.52 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotid_trans | 0.51 | 40.0 | 3.19e-01 | 84.6% | 82.7% |
| 138903 | 101.1.2.232 ↗ | alpha arrays › HTH › HTH › winged helix domain › MLPTv-like_HTH | 0.50 | 30.0 | 3.12e-01 | 86.0% | 63.1% |
D2
medium
residues 21-145
D3
medium
residues 146-193_748-870_936-962
Domain cluster:
rep: IMGVR_UViG_3300033153_004081-3300033153-Ga0366824_10512072__D20-90_358-461
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02867.21 best | Ribonuc_red_lgC | 108.9 | 3.70e-31 | 67.7% | 21.6% |
| PF00317.27 | Ribonuc_red_lgN | 38.3 | 1.60e-09 | 22.7% | 62.3% |
D4
medium
residues 194-304_373-400_437-497_685-712_736-747
Domain cluster:
rep: KF301602.1__AGS80933.1__X__00048__D218-332_389-458_690-711_723-735
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14890.12 best | Intein_splicing | 36.2 | 7.50e-09 | 58.3% | 36.1% |
| PF02867.21 | Ribonuc_red_lgC | 93.3 | 2.10e-26 | 52.1% | 22.5% |
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1peqA02 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.74 | 53.0 | 4.02e-01 | 100.0% | 36.0% |
| 4hylA00 | 3.30.750.24 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain | 0.71 | 31.0 | 4.45e-01 | 95.8% | 86.7% |
| 4o1sA00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.66 | 32.0 | 3.84e-01 | 74.6% | 66.5% |
| 4e2tB00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.65 | 32.0 | 3.90e-01 | 72.9% | 69.2% |
| 2cw8A01 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.65 | 32.0 | 3.86e-01 | 74.6% | 68.6% |
| 2wghA00 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.63 | 58.0 | 4.07e-01 | 100.0% | 35.2% |
| 5o9iA00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.63 | 32.0 | 3.82e-01 | 73.3% | 69.6% |
| 2jmzA01 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.63 | 32.0 | 3.82e-01 | 74.6% | 69.6% |
| 1dq3A01 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.63 | 33.0 | 3.84e-01 | 72.9% | 70.1% |
| 1gv4A02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.58 | 30.0 | 3.60e-01 | 96.7% | 71.7% |
| 1r1rA02 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.58 | 56.0 | 4.18e-01 | 100.0% | 46.9% |
| 2zvbA02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.57 | 27.0 | 3.62e-01 | 76.2% | 82.8% |
| 2lcjA00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.57 | 32.0 | 3.67e-01 | 72.9% | 73.0% |
| 2qs7A00 | 3.40.1260.10 | Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Ychn; Chain: A, › DsrEFH-like | 0.56 | 33.0 | 4.30e-01 | 97.9% | 100.0% |
| 1xjkA00 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.56 | 52.0 | 3.71e-01 | 95.8% | 72.6% |
| 1am2A00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.54 | 32.0 | 3.68e-01 | 71.7% | 76.8% |
| 1vwxO01 | 3.90.1180.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L13p; Chain: A; › Ribosomal protein L13 | 0.54 | 28.0 | 3.55e-01 | 99.2% | 81.0% |
| 3tnjA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.53 | 26.0 | 3.62e-01 | 89.6% | 92.6% |
| 2jaxA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.52 | 28.0 | 3.76e-01 | 99.2% | 97.6% |
| 3kgkB00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.52 | 21.0 | 3.22e-01 | 100.0% | 88.8% |
| 1a9xA08 | 3.40.50.1380 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Methylglyoxal synthase-like domain | 0.52 | 24.0 | 3.46e-01 | 98.3% | 95.3% |
| 6ohkA00 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.52 | 28.0 | 3.28e-01 | 100.0% | 71.2% |
| 1cqxA03 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.52 | 29.0 | 3.69e-01 | 98.8% | 91.5% |
| 6hcdD00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.52 | 27.0 | 3.57e-01 | 100.0% | 89.6% |
ECOD (58)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2472944 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.73 | 53.0 | 4.17e-01 | 100.0% | 39.9% |
| 4937370 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.71 | 55.0 | 3.94e-01 | 78.3% | 100.0% |
| 4963031 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.71 | 61.0 | 4.37e-01 | 88.3% | 96.5% |
| 5066163 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.70 | 30.0 | 4.01e-01 | 70.4% | 71.4% |
| 5023539 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.69 | 32.0 | 4.08e-01 | 73.3% | 70.3% |
| 5013038 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.69 | 31.0 | 3.89e-01 | 72.9% | 66.3% |
| 4993813 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.68 | 32.0 | 4.00e-01 | 73.3% | 69.4% |
| 4993808 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.67 | 30.0 | 3.88e-01 | 70.4% | 71.0% |
| 5030208 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.67 | 58.0 | 4.18e-01 | 89.2% | 91.4% |
| 4564490 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.67 | 58.0 | 4.28e-01 | 89.6% | 96.1% |
| 4979631 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.67 | 30.0 | 3.88e-01 | 72.9% | 70.7% |
| 3949431 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.67 | 31.0 | 3.99e-01 | 71.7% | 72.7% |
| 4298539 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.67 | 58.0 | 4.32e-01 | 89.6% | 98.7% |
| 3823652 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.66 | 58.0 | 4.27e-01 | 90.4% | 98.1% |
| 5052154 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.66 | 32.0 | 3.88e-01 | 74.6% | 69.1% |
| 996122 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.66 | 56.0 | 4.11e-01 | 88.3% | 93.1% |
| 5058546 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.66 | 56.0 | 4.03e-01 | 88.3% | 95.4% |
| 4934525 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.66 | 56.0 | 4.17e-01 | 88.3% | 94.1% |
| 5022295 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.66 | 32.0 | 3.83e-01 | 74.6% | 67.9% |
| 4990406 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.65 | 58.0 | 4.21e-01 | 91.7% | 99.8% |
| 4993853 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.65 | 33.0 | 3.97e-01 | 74.6% | 70.9% |
| 4997604 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.65 | 31.0 | 3.73e-01 | 73.3% | 65.3% |
| 4984220 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.65 | 32.0 | 3.94e-01 | 73.3% | 71.6% |
| 4983458 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.65 | 32.0 | 3.88e-01 | 73.3% | 69.7% |
| 2524072 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.65 | 33.0 | 3.91e-01 | 75.0% | 69.4% |
| 3590466 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.64 | 56.0 | 4.11e-01 | 89.6% | 98.9% |
| 4943244 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.64 | 33.0 | 3.89e-01 | 73.3% | 70.0% |
| 4039971 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.63 | 32.0 | 3.83e-01 | 72.9% | 68.6% |
| 5040104 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.63 | 57.0 | 4.29e-01 | 92.5% | 98.0% |
| 4983616 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.63 | 32.0 | 3.84e-01 | 72.9% | 70.0% |
| 4943231 | 69.1.1.16 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › ATP-synt_ab | 0.63 | 34.0 | 3.89e-01 | 73.3% | 69.4% |
| 3963206 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.63 | 56.0 | 4.19e-01 | 92.9% | 99.1% |
| 5012957 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.62 | 33.0 | 3.86e-01 | 73.3% | 71.4% |
| 5011787 | 7545.1.1.1 ↗ | a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DsrE | 0.61 | 33.0 | 4.48e-01 | 98.3% | 100.0% |
| 4998392 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.61 | 32.0 | 3.93e-01 | 71.7% | 75.8% |
| 3942765 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.60 | 58.0 | 4.30e-01 | 100.0% | 44.9% |
| 4145444 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.60 | 58.0 | 4.31e-01 | 100.0% | 45.3% |
| 4594307 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.60 | 31.0 | 3.75e-01 | 72.9% | 72.4% |
| 4067125 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.60 | 57.0 | 4.26e-01 | 100.0% | 46.1% |
| 3500621 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.59 | 58.0 | 4.30e-01 | 100.0% | 49.2% |
| 4985374 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.59 | 55.0 | 3.99e-01 | 95.8% | 75.1% |
| 3958480 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.59 | 56.0 | 4.72e-01 | 99.2% | 63.8% |
| 2504767 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.58 | 55.0 | 4.17e-01 | 100.0% | 46.3% |
| 5066389 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.58 | 32.0 | 3.65e-01 | 73.3% | 69.5% |
| 3972491 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.58 | 54.0 | 3.93e-01 | 96.2% | 89.6% |
| 4975503 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.58 | 33.0 | 3.80e-01 | 73.3% | 74.4% |
| 4971412 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.57 | 32.0 | 3.71e-01 | 73.3% | 73.3% |
| 4993733 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.57 | 53.0 | 3.90e-01 | 95.8% | 77.1% |
| 4932851 | 69.1.1.1 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint | 0.57 | 28.0 | 3.75e-01 | 82.1% | 85.2% |
| 182766 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.57 | 32.0 | 3.67e-01 | 72.9% | 73.0% |
| 5063882 | 1074.1.1.6 ↗ | alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Ribonuc_red_lgC | 0.56 | 54.0 | 4.63e-01 | 100.0% | 67.9% |
| 4982083 | 7545.1.1.3 ↗ | a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DrsE_2 | 0.56 | 32.0 | 4.21e-01 | 97.5% | 100.0% |
| 4994375 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.55 | 51.0 | 3.90e-01 | 95.4% | 92.8% |
| 4978263 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.54 | 32.0 | 3.90e-01 | 95.0% | 86.7% |
| 3511246 | 69.1.1.1 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint | 0.53 | 30.0 | 3.62e-01 | 70.4% | 81.8% |
| 5031634 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.52 | 29.0 | 3.64e-01 | 94.6% | 84.4% |
| 3603291 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.52 | 32.0 | 3.79e-01 | 95.0% | 85.1% |
| 5031914 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.51 | 33.0 | 3.80e-01 | 95.0% | 84.9% |
D5
medium
residues 305-372_1067-1088
Domain cluster:
rep: IMGVR_UViG_3300007266_000133-3300007266-Ga0101450_1063125__D8-101
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02867.21 best | Ribonuc_red_lgC | 68.7 | 5.60e-19 | 76.7% | 12.8% |
D6
medium
residues 401-436_713-735
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1mi8A00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.87 | 77.0 | 5.72e-01 | 96.6% | 98.6% |
| 1zdeA00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.87 | 78.0 | 5.57e-01 | 98.3% | 95.0% |
| 6vgwA01 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.83 | 73.0 | 5.44e-01 | 96.6% | 100.0% |
| 2lwyA00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.82 | 70.0 | 5.29e-01 | 94.9% | 98.6% |
| 2jmzA01 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.80 | 68.0 | 4.89e-01 | 94.9% | 100.0% |
| 4lx3A00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.62 | 54.0 | 4.41e-01 | 93.2% | 80.2% |
| 1g4fA00 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.57 | 43.0 | 3.91e-01 | 86.4% | 87.2% |
| 6kbrC00 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.53 | 34.0 | 3.51e-01 | 83.1% | 70.9% |
| 2hqrA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 28.0 | 2.36e-01 | 83.1% | 25.5% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4457379 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.87 | 78.0 | 5.76e-01 | 98.3% | 95.2% |
| 4322985 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.85 | 77.0 | 4.68e-01 | 100.0% | 88.7% |
| 4979631 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.85 | 74.0 | 5.36e-01 | 94.9% | 100.0% |
| 4971400 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.84 | 75.0 | 4.68e-01 | 98.3% | 53.9% |
| 5028788 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.83 | 74.0 | 5.54e-01 | 98.3% | 100.0% |
| 4997604 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.83 | 74.0 | 5.23e-01 | 98.3% | 97.6% |
| 4821446 | 69.1.1.0 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint | 0.56 | 49.0 | 3.90e-01 | 96.6% | 89.2% |
| 3228486 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.53 | 42.0 | 3.79e-01 | 88.1% | 63.5% |
| 3215558 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.52 | 41.0 | 2.85e-01 | 84.7% | 30.5% |
| 3914628 | 376.1.1.27 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 | 0.52 | 40.0 | 3.60e-01 | 86.4% | 67.1% |
D7
medium
residues 963-1034_1092-1114
Domain cluster:
rep: ORF61__YP_009173941__Felis_catus_gammaherpesvirus_1__1452540__D602-680