←Back to structures

ribonucleotid_reductase_large_subunit

Euk-Vir

Lymphocystis_disease_virus_4

ribonucleotid_reductase_large_subunit__YP_010087980__Lymphocystis_disease_virus_4__2704413

Identity

Accession:
YP_010087980 ↗
Protein ID:
ribonucleotid_reductase_large_subunit
Kingdom:
euk

Quality

91.0 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Iridoviridae› Lymphocystivirus› Lymphocystis_disease_virus_4

TaxID: 2704413

Cluster

View cluster (22 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 75-265
PDB
Domain cluster: rep: IMGVR_UViG_3300042092_000730-3300042092-Ga0453238_010587_859_2079__D220-402
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02867.21 best Ribonuc_red_lgC 141.1 6.60e-41 100.0% 41.6%
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2wghA00 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.95 92.0 6.08e-01 100.0% 34.0%
1r1rA02 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.93 91.0 6.36e-01 100.0% 43.8%
1peqA02 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.92 72.0 5.12e-01 100.0% 31.8%
1xjkA00 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.90 85.0 5.67e-01 100.0% 30.0%
3vkgA17 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.71 34.0 4.11e-01 82.7% 67.7%
6m4eA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.65 57.0 4.09e-01 93.2% 63.9%
3vkgA05 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 35.0 3.97e-01 84.8% 71.8%
3g23A02 3.50.30.60 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › LD-carboxypeptidase A C-terminal domain-like 0.61 33.0 4.34e-01 93.7% 94.3%
3cu2A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.61 46.0 4.31e-01 100.0% 63.2%
1bqcA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.60 55.0 4.66e-01 97.4% 71.5%
1hjxA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.60 54.0 4.67e-01 97.4% 74.2%
2g8lA03 3.40.50.10880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Uncharacterised protein PF01937, DUF89, domain 3 0.59 36.0 4.05e-01 94.8% 76.2%
1jhdA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.59 33.0 3.25e-01 100.0% 49.3%
1ur4A00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.59 54.0 4.30e-01 100.0% 76.7%
3aptA00 3.20.20.220 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 0.58 54.0 4.68e-01 100.0% 78.8%
3cqjA00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.58 53.0 4.72e-01 100.0% 88.8%
1telA02 3.20.20.110 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Ribulose bisphosphate carboxylase, large subunit, C-terminal domain 0.58 54.0 4.67e-01 100.0% 76.3%
1gv4A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 37.0 3.96e-01 96.9% 73.5%
3erpA01 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.57 53.0 4.53e-01 100.0% 84.6%
2egvA02 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.57 34.0 3.69e-01 100.0% 68.7%
3topA03 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.57 52.0 4.15e-01 100.0% 89.7%
2qs7A00 3.40.1260.10 Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Ychn; Chain: A, › DsrEFH-like 0.56 39.0 4.58e-01 100.0% 97.8%
2ftpA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.56 48.0 4.16e-01 92.7% 81.3%
3slkA01 3.40.50.11460 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 42.0 4.34e-01 98.4% 82.5%
1ct5A00 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.55 46.0 4.36e-01 100.0% 73.7%
1v6zA02 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.55 32.0 3.51e-01 100.0% 66.7%
1fdrA02 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.55 36.0 4.02e-01 93.2% 82.9%
5vxsA01 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.54 50.0 4.44e-01 100.0% 76.2%
4p0tB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 37.0 4.09e-01 84.8% 88.0%
3ij6A00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.53 49.0 4.21e-01 100.0% 85.8%
1eokA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.53 48.0 4.28e-01 100.0% 93.3%
4gicA01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.53 32.0 3.67e-01 100.0% 78.5%
1ga6A00 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.53 48.0 3.88e-01 98.4% 72.4%
1vwxO01 3.90.1180.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L13p; Chain: A; › Ribosomal protein L13 0.53 32.0 3.60e-01 100.0% 76.9%
2ffjA03 3.40.50.10880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Uncharacterised protein PF01937, DUF89, domain 3 0.53 32.0 3.59e-01 94.8% 77.4%
1vr6A02 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.52 48.0 4.32e-01 100.0% 81.0%
4emyA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.52 41.0 3.82e-01 81.7% 69.3%
5l3qB02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 44.0 4.16e-01 93.2% 73.8%
4o53A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.52 48.0 4.39e-01 100.0% 92.0%
2i6dA02 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.52 29.0 3.22e-01 100.0% 65.0%
4rgyA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 46.0 4.28e-01 97.9% 98.7%
3ua3A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 38.0 3.95e-01 95.8% 83.2%
2pq6A01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.51 46.0 4.42e-01 97.9% 97.7%
3eleA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.51 39.0 3.66e-01 81.7% 65.1%
4wnyA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.51 32.0 3.82e-01 100.0% 91.7%
5kzkA02 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.50 28.0 3.10e-01 100.0% 64.1%
2jaxA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.50 32.0 3.83e-01 100.0% 96.0%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2472944 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.96 84.0 6.06e-01 100.0% 38.1%
3500621 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.96 94.0 6.49e-01 100.0% 43.3%
4298539 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.96 94.0 6.44e-01 100.0% 41.5%
4067125 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.96 94.0 6.51e-01 100.0% 44.3%
3823652 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.95 93.0 6.32e-01 100.0% 38.8%
3942765 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.95 93.0 6.42e-01 100.0% 41.9%
3963206 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.95 93.0 6.39e-01 100.0% 41.2%
4145444 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.95 93.0 6.43e-01 100.0% 42.3%
4015532 2500.1.1.0 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.95 93.0 6.28e-01 100.0% 38.1%
4963031 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.94 92.0 6.14e-01 100.0% 43.8%
3958480 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.94 91.0 7.01e-01 99.5% 58.6%
3590466 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.94 92.0 6.27e-01 100.0% 40.0%
996122 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.94 91.0 6.15e-01 100.0% 37.5%
4190659 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.93 90.0 5.88e-01 100.0% 31.3%
4937370 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.93 90.0 6.04e-01 100.0% 41.3%
5030208 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.93 90.0 6.01e-01 100.0% 35.0%
4934525 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.92 90.0 6.18e-01 100.0% 35.2%
4990406 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.92 90.0 6.05e-01 100.0% 39.7%
5058546 2500.1.1.0 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.92 90.0 5.97e-01 100.0% 35.7%
5063882 1074.1.1.6 ↗ alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Ribonuc_red_lgC 0.92 87.0 6.81e-01 100.0% 52.4%
4985374 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.92 90.0 6.06e-01 100.0% 33.2%
4564490 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.92 89.0 6.09e-01 100.0% 35.0%
3972491 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.91 89.0 6.02e-01 100.0% 39.5%
2504767 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.91 89.0 6.21e-01 100.0% 42.3%
5040104 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.90 87.0 6.11e-01 100.0% 38.0%
4993733 2500.1.1.0 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.89 85.0 5.85e-01 98.4% 82.2%
4994375 2500.1.1.0 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.88 84.0 5.95e-01 98.4% 98.6%
4993932 7545.1.1.1 ↗ a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DsrE 0.72 37.0 5.14e-01 100.0% 96.0%
4988971 7545.1.1.1 ↗ a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DsrE 0.70 37.0 5.03e-01 100.0% 97.0%
4992764 7545.1.1.2 ↗ a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DsrH 0.69 38.0 4.97e-01 100.0% 95.4%
4985920 7545.1.1.2 ↗ a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DsrH 0.68 38.0 4.93e-01 100.0% 95.5%
5058299 7545.1.1.1 ↗ a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DsrE 0.66 37.0 4.78e-01 100.0% 96.3%
5033488 7545.1.1.1 ↗ a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DsrE 0.63 38.0 4.80e-01 99.5% 98.2%
4991493 7545.1.1.1 ↗ a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DsrE 0.62 39.0 4.77e-01 100.0% 97.6%
5011787 7545.1.1.1 ↗ a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DsrE 0.61 39.0 4.75e-01 100.0% 97.6%
4424677 2002.1.1.30 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.60 55.0 4.43e-01 99.5% 71.5%
5008349 7545.1.1.3 ↗ a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DrsE_2 0.60 38.0 4.68e-01 100.0% 98.4%
3259156 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.60 38.0 4.46e-01 97.4% 92.3%
8846 2002.1.1.151 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_53 0.59 54.0 4.30e-01 100.0% 76.7%
2429458 2002.1.1.276 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PF29664 0.59 54.0 4.27e-01 100.0% 76.8%
4982634 7545.1.1.0 ↗ a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like 0.58 39.0 4.65e-01 100.0% 96.3%
1264276 2002.1.1.1 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › RuBisCO_large 0.58 54.0 4.65e-01 100.0% 73.2%
5024506 7545.1.1.3 ↗ a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DrsE_2 0.58 39.0 4.64e-01 100.0% 97.8%
4225707 2002.1.1.30 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.57 53.0 4.29e-01 99.5% 76.6%
3996037 2002.1.1.25 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HMGL-like 0.56 49.0 4.11e-01 92.7% 80.6%
3294358 2002.1.1.25 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HMGL-like 0.56 52.0 4.35e-01 100.0% 74.9%
5034981 7545.1.1.1 ↗ a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DsrE 0.56 38.0 4.47e-01 86.4% 97.0%
4981836 7545.1.1.1 ↗ a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DsrE 0.56 38.0 4.49e-01 86.4% 99.2%
4015822 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.56 52.0 4.20e-01 99.5% 78.3%
4991441 7545.1.1.3 ↗ a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DrsE_2 0.56 39.0 4.54e-01 100.0% 97.1%
4945217 7545.1.1.3 ↗ a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DrsE_2 0.56 39.0 4.55e-01 100.0% 98.5%
3188309 2002.1.1.30 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.56 51.0 4.15e-01 99.5% 79.2%
3222994 2006.1.6.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA 0.55 38.0 3.92e-01 84.3% 71.9%
4982083 7545.1.1.3 ↗ a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DrsE_2 0.55 38.0 4.48e-01 100.0% 98.5%
5051906 7545.1.1.3 ↗ a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DrsE_2 0.55 38.0 4.47e-01 100.0% 98.5%
3516118 2002.1.1.45 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_31_2nd 0.55 51.0 4.04e-01 100.0% 75.0%
3890319 2002.1.1.7 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.55 51.0 4.22e-01 100.0% 74.2%
5071350 7545.1.1.3 ↗ a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DrsE_2 0.55 38.0 4.44e-01 100.0% 97.1%
3782326 2003.1.1.66 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › CoA_binding_2 0.53 39.0 4.28e-01 97.9% 91.3%
5040846 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.53 33.0 3.90e-01 100.0% 88.9%
3349855 7512.1.1.77 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_N 0.52 34.0 3.81e-01 86.9% 83.3%
3936700 2006.1.6.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.51 39.0 4.00e-01 97.9% 81.6%
1406486 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.51 32.0 3.82e-01 100.0% 91.7%
3648168 7512.1.1.0 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.50 35.0 3.34e-01 87.4% 58.4%
3375006 7512.1.1.0 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.50 45.0 4.02e-01 96.9% 95.6%
D2 high residues 418-474
PDB
Domain cluster: rep: IMGVR_UViG_3300006567_000026-3300006567-Ga0099958_11086953__D213-268
D3 medium residues 1-28_275-288_324-378_397-416
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02867.21 best Ribonuc_red_lgC 45.6 5.70e-12 67.5% 11.5%
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2wghA00 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.93 90.0 5.41e-01 100.0% 75.9%
1l1lA01 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.85 80.0 5.08e-01 100.0% 86.1%
1peqA02 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.85 72.0 4.55e-01 87.2% 79.7%
1r1rA02 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.84 69.0 4.32e-01 84.6% 84.8%
1gqiA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.51 44.0 3.25e-01 96.6% 52.5%
4mt4A00 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.50 42.0 2.82e-01 91.5% 86.7%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2472944 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.99 74.0 4.72e-01 76.1% 32.7%
4822330 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.95 71.0 4.50e-01 76.1% 45.6%
4985374 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.94 88.0 5.38e-01 96.6% 75.8%
4993733 2500.1.1.0 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.94 88.0 5.41e-01 96.6% 78.0%
3823652 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.87 72.0 4.40e-01 84.6% 61.9%
5040104 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.85 71.0 4.43e-01 85.5% 59.0%
3972491 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.77 74.0 4.54e-01 100.0% 79.1%
None — 0.57 41.0 3.40e-01 76.1% 43.6%
D4 medium residues 29-72_289-323
PDB
Domain cluster: rep: ribonucleotide_reductase_alpha_subunit__YP_009342238__Lymphocystis_disease_virus_Sa__1898060__D22-70_287-314
D5 medium residues 379-396_478-498_526-538
PDB
Domain cluster: representative