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ribonucleotide_reductase_alpha_subunit

Euk-Vir

Bohle_iridovirus

ribonucleotide_reductase_alpha_subunit__YP_009506698__Bohle_iridovirus__100220

Identity

Accession:
YP_009506698 ↗
Protein ID:
ribonucleotide_reductase_alpha_subunit
Kingdom:
euk

Quality

89.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 421-477
PDB
D2 medium residues 39-103_251-384
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02867.21 best Ribonuc_red_lgC 97.4 1.20e-27 72.9% 26.2%
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1peqA02 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.92 83.0 5.96e-01 92.0% 63.0%
2wghA00 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.92 90.0 5.98e-01 100.0% 58.2%
1r1rA02 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.90 81.0 5.73e-01 92.0% 71.8%
1xjkA00 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.90 88.0 5.87e-01 100.0% 60.7%
1lyvA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.58 33.0 2.93e-01 94.0% 37.1%
1lq7A00 1.20.1270.70 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle 0.57 16.0 2.79e-01 93.5% 70.1%
3vx8A02 3.40.140.70 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Ubiquitin-like modifier-activating enzyme ATG7 N-terminal domain 0.55 34.0 3.73e-01 92.0% 74.4%
3ejfA00 3.40.220.10 Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 0.53 32.0 3.50e-01 89.9% 69.9%
2wauA01 1.20.1310.20 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Duffy-antigen binding domain 0.51 37.0 4.15e-01 94.5% 95.5%
3gpgA00 3.40.220.10 Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 0.51 31.0 3.37e-01 91.5% 71.6%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2472944 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.98 80.0 5.87e-01 83.4% 65.3%
3823652 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.93 76.0 5.18e-01 82.9% 63.5%
2504767 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.93 76.0 5.35e-01 83.4% 67.9%
996122 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.93 76.0 5.16e-01 83.4% 59.3%
3958480 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.93 74.0 5.77e-01 81.4% 93.0%
3500621 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.93 76.0 5.34e-01 83.9% 70.6%
3590466 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.92 75.0 5.19e-01 82.4% 63.3%
4015532 2500.1.1.0 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.92 75.0 5.14e-01 82.9% 59.3%
4145444 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.91 75.0 5.28e-01 83.9% 66.1%
3942765 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.91 75.0 5.25e-01 83.9% 65.5%
3963206 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.91 76.0 5.28e-01 85.4% 64.7%
4298539 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.90 77.0 5.37e-01 86.9% 64.5%
4990406 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.90 73.0 4.94e-01 82.4% 60.8%
4937370 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.90 73.0 4.91e-01 82.4% 66.4%
4934525 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.90 75.0 5.18e-01 84.9% 58.0%
4067125 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.90 73.0 5.17e-01 83.4% 66.5%
4963031 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.89 72.0 4.87e-01 82.9% 61.8%
5040104 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.88 77.0 5.41e-01 88.4% 63.9%
4190659 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.87 74.0 4.86e-01 86.9% 49.7%
5063882 1074.1.1.6 alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Ribonuc_red_lgC 0.87 70.0 5.59e-01 82.9% 85.4%
4564490 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.87 74.0 5.09e-01 86.9% 57.1%
4993733 2500.1.1.0 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.85 83.0 5.77e-01 100.0% 62.7%
4994375 2500.1.1.0 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.85 68.0 4.86e-01 81.9% 62.8%
3972491 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.82 75.0 5.13e-01 93.0% 62.4%
5030208 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.79 76.0 5.09e-01 98.5% 62.3%
3618616 327.11.1.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) 0.64 32.0 4.03e-01 90.5% 77.3%
3367871 2496.1.1.1 a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like › CRAL_TRIO 0.63 33.0 3.56e-01 100.0% 55.4%
3411496 327.11.1.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) 0.62 30.0 3.96e-01 84.9% 84.5%
3974303 4081.1.1.16 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › T6SS_TssF 0.60 31.0 3.79e-01 99.0% 76.8%
5076048 2006.1.4.55 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › NRDD 0.50 47.0 4.53e-01 99.0% 95.0%
4208599 1002.1.1.1 alpha complex topology › Fluoride ion channel › Fluoride ion channel › Fluoride ion channel › CRCB 0.50 31.0 3.75e-01 94.0% 92.3%
D3 medium residues 104-164
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02867.21 best Ribonuc_red_lgC 40.1 2.70e-10 95.1% 10.1%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7whgG02 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.63 41.0 3.68e-01 80.3% 44.6%
2v4iB01 3.30.2330.10 Alpha Beta › 2-Layer Sandwich › arginine biosynthesis bifunctional protein fold › arginine biosynthesis bifunctional protein suprefamily 0.57 40.0 3.81e-01 78.7% 61.0%
3mb2B00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.56 40.0 4.08e-01 80.3% 79.7%
3s7zA01 3.40.50.1860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 46.0 3.78e-01 100.0% 72.6%
3laxA00 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.55 39.0 3.33e-01 77.0% 65.1%
5hj7A01 3.40.50.1860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 44.0 3.48e-01 100.0% 56.3%
1vraB01 3.30.2330.10 Alpha Beta › 2-Layer Sandwich › arginine biosynthesis bifunctional protein fold › arginine biosynthesis bifunctional protein suprefamily 0.50 37.0 3.44e-01 83.6% 63.5%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5056366 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.71 47.0 3.85e-01 78.7% 36.5%
4319024 2004.1.1.414 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU, MMR_HSR1 0.62 52.0 3.77e-01 100.0% 32.3%
3325426 2007.2.3.3 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Syja_N 0.59 43.0 3.11e-01 80.3% 26.3%
3265408 2004.1.1.453 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1, NOG1 0.55 47.0 3.43e-01 100.0% 33.0%
3185141 300.1.1.1 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc 0.53 45.0 3.11e-01 98.4% 53.9%
3604522 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 41.0 3.08e-01 100.0% 28.8%
3231431 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.52 32.0 2.94e-01 73.8% 43.4%
3198744 2485.1.1.78 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Suc_Fer-like 0.51 35.0 3.04e-01 77.0% 44.0%
5003985 101.1.2.25 alpha arrays › HTH › HTH › winged helix domain › FUR 0.50 35.0 2.71e-01 72.1% 34.1%
D4 medium residues 165-250_494-525
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02867.21 best Ribonuc_red_lgC 45.7 5.50e-12 71.2% 16.8%
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1r1rA02 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.93 90.0 5.65e-01 100.0% 73.6%
2wghA00 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.92 89.0 5.32e-01 100.0% 60.4%
1xjkA00 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.83 79.0 4.82e-01 100.0% 61.4%
2vugA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.53 24.0 2.98e-01 83.9% 65.3%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3963206 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.94 90.0 5.60e-01 100.0% 74.2%
4145444 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.93 90.0 5.61e-01 100.0% 76.2%
3942765 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.93 90.0 5.60e-01 100.0% 75.5%
3823652 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.93 90.0 5.50e-01 100.0% 76.1%
4015532 2500.1.1.0 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.93 89.0 5.48e-01 100.0% 71.7%
996122 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.91 87.0 5.35e-01 100.0% 71.3%
4963031 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.88 83.0 5.11e-01 100.0% 74.9%
4993733 2500.1.1.0 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.87 84.0 5.19e-01 100.0% 63.6%
4994375 2500.1.1.0 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.87 83.0 5.27e-01 100.0% 78.2%
4190659 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.87 83.0 4.99e-01 100.0% 78.1%
5058546 2500.1.1.0 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.87 83.0 5.06e-01 100.0% 74.1%
5030208 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.87 83.0 5.07e-01 100.0% 70.7%
5040104 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.86 83.0 5.21e-01 100.0% 71.4%
4985374 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.86 82.0 5.07e-01 100.0% 62.1%
4937370 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.86 81.0 4.99e-01 100.0% 80.3%
4564490 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.86 81.0 5.06e-01 100.0% 72.9%
4934525 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.85 81.0 5.04e-01 100.0% 71.0%
3958480 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.84 65.0 4.39e-01 78.8% 61.6%
2472944 2500.1.1.2 a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.82 79.0 5.10e-01 100.0% 75.0%
5063882 1074.1.1.6 alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Ribonuc_red_lgC 0.73 56.0 3.85e-01 79.7% 43.4%
3259346 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.62 37.0 3.26e-01 87.3% 39.4%
2417897 1070.2.1.1 alpha complex topology › CRISPR-associated endonuclease first helical domain › CRISPR-associated endonuclease C2c1 first helical domain › CRISPR-associated endonuclease C2c1 first helical domain › C2c1_helical_1st 0.62 37.0 2.63e-01 89.8% 19.8%
3970048 4292.2.1.0 a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.53 28.0 3.47e-01 72.9% 79.5%