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ribonucleotide_reductase_large_subunit

Euk-Vir

Peridroma_alphabaculovirus

ribonucleotide_reductase_large_subunit__YP_009049963__Peridroma_alphabaculovirus__1346829

Identity

Accession:
YP_009049963 ↗
Protein ID:
ribonucleotide_reductase_large_subunit
Kingdom:
euk

Quality

92.0 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Peridroma_alphabaculovirus

TaxID: 1346829

Cluster

View cluster (122 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-91
PDB
Domain cluster: rep: IMGVR_UViG_3300007266_000133-3300007266-Ga0101450_1063124__D4-90
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03477.22 best ATP-cone 51.4 1.80e-13 100.0% 97.7%
D2 medium residues 95-208
PDB
Domain cluster: rep: NC_007021.1__YP_238596.1__TwortORF045__00062__D44-158
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00317.27 best Ribonuc_red_lgN 86.0 2.00e-24 64.0% 96.1%
D3 medium residues 209-326_393-445
PDB
Domain cluster: rep: ribonucleotide_reductase_large_subunit__YP_009702292__African_swine_fever_virus__10497__D187-309_381-436_716-757
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF02867.21 best Ribonuc_red_lgC 145.3 3.60e-42 69.0% 21.9%
PF02867.21 Ribonuc_red_lgC 69.5 3.20e-19 31.6% 10.3%
D4 medium residues 327-392
PDB
Domain cluster: rep: orf61__YP_009044444__Alcelaphine_gammaherpesvirus_2__138184__D298-350
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02867.21 best Ribonuc_red_lgC 56.1 3.90e-15 100.0% 12.6%
D5 medium residues 446-611_676-741
PDB
Domain cluster: rep: OM654377.1__UNY40333.1__KLEP7_gp197__00197__D5-152_207-277
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF02867.21 best Ribonuc_red_lgC 195.6 1.90e-57 72.0% 31.1%
PF02867.21 Ribonuc_red_lgC 53.9 1.70e-14 24.1% 10.7%
D6 medium residues 612-675
PDB
Domain cluster: rep: IMGVR_UViG_3300006567_000026-3300006567-Ga0099958_11086953__D213-268
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02867.21 best Ribonuc_red_lgC 47.0 2.20e-12 100.0% 12.0%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xfvA00 3.10.260.30 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › 0.58 39.0 3.35e-01 70.3% 88.9%
1mtpA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.54 42.0 3.73e-01 100.0% 59.3%
7l9pK01 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.54 37.0 3.09e-01 73.4% 72.3%
3ervA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.54 37.0 2.72e-01 73.4% 87.5%
3zlaD01 1.20.142.20 Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › 0.52 35.0 2.90e-01 70.3% 57.1%
1tedA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.52 37.0 2.92e-01 78.1% 83.2%
1u0mA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.51 37.0 2.96e-01 79.7% 84.9%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2472944 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.92 73.0 4.28e-01 100.0% 12.2%
4015532 2500.1.1.0 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.90 85.0 4.81e-01 100.0% 11.1%
3823652 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.90 85.0 4.81e-01 100.0% 11.3%
996122 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.85 79.0 4.50e-01 100.0% 11.0%
4990406 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.84 73.0 4.17e-01 100.0% 10.5%
4985374 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.82 75.0 4.30e-01 100.0% 11.1%
4994375 2500.1.1.0 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.79 74.0 4.28e-01 100.0% 12.8%
4934525 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.79 74.0 4.22e-01 100.0% 11.7%
4993733 2500.1.1.0 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.78 71.0 4.05e-01 100.0% 11.5%
4532926 7581.1.1.20 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Chal_sti_synt_N+Chal_sti_synt_C 0.58 44.0 2.75e-01 85.9% 86.5%
3986582 327.16.1.3 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin_N 0.55 45.0 3.75e-01 100.0% 82.3%
3779 4967.1.1.2 ↗ alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › RdRP_1 0.54 31.0 2.66e-01 70.3% 32.7%
3296120 3922.1.1.126 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › XH 0.53 38.0 3.36e-01 78.1% 57.0%
4362784 7581.1.1.41 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Chal_sti_synt_N, Chal_sti_synt_C, FAE1_CUT1_RppA, ACP_syn_III 0.52 39.0 2.54e-01 87.5% 89.9%
1516022 7581.1.1.6 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Chal_sti_synt_C 0.51 37.0 2.96e-01 79.7% 85.5%
3701864 70.3.1.0 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like 0.51 36.0 2.43e-01 78.1% 40.8%
3450312 7581.1.1.6 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Chal_sti_synt_C 0.50 36.0 2.71e-01 78.1% 78.3%