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ribonucleotide_reductase_large_subunit

Euk-Vir

NY_014_poxvirus

ribonucleotide_reductase_large_subunit__YP_009408453__NY_014_poxvirus__2025360

Identity

Accession:: YP_009408453 ↗
Protein ID:: ribonucleotide_reductase_large_subunit
Kingdom:: euk

Quality

92.4 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Chitovirales› Poxviridae› Centapoxvirus› NY_014_poxvirus

TaxID: 2025360

Cluster

View cluster (122 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 2-88

PDB

Domain cluster: rep: IMGVR_UViG_3300007266_000133-3300007266-Ga0101450_1063124__D4-90

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03477.22 best	ATP-cone	61.2	1.60e-16	100.0%	96.6%

D2 medium residues 205-314_435-447

PDB

Domain cluster: rep: IMGVR_UViG_3300028089_000252-3300028089-Ga0255299_10029802__D277-388_452-478

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02867.21 best	Ribonuc_red_lgC	149.3	2.10e-43	87.8%	20.0%

D3 medium residues 315-396

PDB

Domain cluster: rep: orf61__YP_009044444__Alcelaphine_gammaherpesvirus_2__138184__D298-350

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02867.21 best	Ribonuc_red_lgC	93.2	2.10e-26	100.0%	15.5%

D4 medium residues 397-434_700-736

PDB

Domain cluster: rep: ribonucleotide_reductase_subunit_1__YP_009227272__Macropodid_alphaherpesvirus_1__137443__D596-618_912-955

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02867.21 best	Ribonuc_red_lgC	44.6	1.10e-11	52.0%	7.6%

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2wghA00	3.20.70.20	Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain ›	1.00	92.0	5.18e-01	94.7%	49.1%
1utbB01	3.40.190.10	Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II	0.57	34.0	2.85e-01	88.0%	34.4%
2zyhA01	3.40.50.1820	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain	0.53	33.0	2.38e-01	88.0%	21.1%
3m20A00	3.30.429.10	Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor	0.52	33.0	3.67e-01	98.7%	81.4%
5tseA00	3.30.160.150	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain	0.50	38.0	3.24e-01	84.0%	77.2%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3823652	2500.1.1.2 ↗	a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC	0.99	96.0	5.47e-01	100.0%	63.9%
4015532	2500.1.1.0 ↗	a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel	0.98	95.0	5.43e-01	100.0%	59.7%
996122	2500.1.1.2 ↗	a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC	0.96	92.0	5.27e-01	100.0%	60.1%
2714483	7523.1.1.2 ↗	a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Transferrin	0.52	35.0	3.29e-01	96.0%	54.3%

D5 medium residues 448-610_676-699

PDB

Domain cluster: rep: rr1__YP_009552690__Operophtera_brumata_nucleopolyhedrovirus__1046267__D445-618_684-706

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02867.21 best	Ribonuc_red_lgC	212.5	1.60e-62	89.8%	31.5%

D6 medium residues 611-675

PDB

Domain cluster: rep: IMGVR_UViG_3300006567_000026-3300006567-Ga0099958_11086953__D213-268

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02867.21 best	Ribonuc_red_lgC	48.3	8.50e-13	100.0%	12.4%