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ribonucleotide_reductase_large_subunit

Euk-Vir

Vombatid_gammaherpesvirus_1

ribonucleotide_reductase_large_subunit__YP_010087430__Vombatid_gammaherpesvirus_1__2052651

Identity

Accession:: YP_010087430 ↗
Protein ID:: ribonucleotide_reductase_large_subunit
Kingdom:: euk

Quality

88.2 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Manticavirus› Vombatid_gammaherpesvirus_1

TaxID: 2052651

Cluster

View cluster (122 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-140

PDB

Domain cluster: rep: ribonucleotide_reductase_subunit_1__YP_401655__Human_gammaherpesvirus_4__10376__D15-179

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00317.27 best	Ribonuc_red_lgN	28.8	1.40e-06	35.0%	48.0%

D2 medium residues 141-187_406-420

PDB

Domain cluster: representative

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3o2pE00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.58	38.0	3.50e-01	88.7%	48.8%
4p55B00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.51	39.0	3.48e-01	88.7%	57.3%
7z8iC01	3.90.640.10	Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4	0.50	35.0	3.29e-01	98.4%	58.0%

ECOD (18)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4011438	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.59	49.0	3.78e-01	95.2%	58.7%
3493458	101.1.2.236 ↗	alpha arrays › HTH › HTH › winged helix domain › POLR3C_WHD	0.58	46.0	3.56e-01	90.3%	82.0%
3173396	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.58	48.0	4.08e-01	96.8%	58.2%
3734448	101.1.2.51 ↗	alpha arrays › HTH › HTH › winged helix domain › Sec62	0.56	47.0	3.77e-01	95.2%	67.7%
3940471	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.56	41.0	3.74e-01	87.1%	57.6%
3662349	101.1.2.386 ↗	alpha arrays › HTH › HTH › winged helix domain › WH_DRP	0.54	45.0	3.72e-01	96.8%	54.2%
5051570	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.54	45.0	3.83e-01	100.0%	61.7%
3801946	101.1.2.462 ↗	alpha arrays › HTH › HTH › winged helix domain › DUF7647	0.54	44.0	3.47e-01	100.0%	71.0%
5057164	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.53	42.0	3.69e-01	90.3%	83.0%
3480146	101.1.2.178 ↗	alpha arrays › HTH › HTH › winged helix domain › HTH_61	0.53	44.0	3.77e-01	98.4%	71.8%
3360995	4958.1.1.1 ↗	a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5,RNA_pol_Rpb1_4	0.53	37.0	2.52e-01	75.8%	52.4%
4027018	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.52	39.0	2.33e-01	82.3%	19.4%
5047341	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.52	39.0	3.39e-01	96.8%	49.5%
4602598	101.1.2.147 ↗	alpha arrays › HTH › HTH › winged helix domain › ORC4_C	0.52	43.0	3.56e-01	100.0%	54.4%
3868765	101.1.2.178 ↗	alpha arrays › HTH › HTH › winged helix domain › HTH_61	0.51	41.0	3.69e-01	93.5%	97.9%
3799091	576.1.1.0 ↗	few secondary structure elements › Tetraspanin extracellular domain › Tetraspanin extracellular domain › Tetraspanin extracellular domain	0.51	40.0	3.31e-01	91.9%	93.8%
3592443	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.51	41.0	3.27e-01	100.0%	45.8%
3797520	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.50	42.0	3.04e-01	96.8%	52.8%

D3 medium residues 188-294_362-405

PDB

Domain cluster: rep: IMGVR_UViG_3300042092_000730-3300042092-Ga0453238_010587_859_2079__D220-402

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02867.21 best	Ribonuc_red_lgC	61.3	9.80e-17	70.9%	22.5%
PF02867.21	Ribonuc_red_lgC	35.5	6.40e-09	29.8%	7.8%

D4 medium residues 295-361

PDB

Domain cluster: rep: orf61__YP_009044444__Alcelaphine_gammaherpesvirus_2__138184__D298-350

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02867.21 best	Ribonuc_red_lgC	34.8	1.10e-08	100.0%	12.2%

D5 medium residues 443-612_671-693

PDB

Domain cluster: rep: rr1__YP_009552690__Operophtera_brumata_nucleopolyhedrovirus__1046267__D445-618_684-706

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02867.21 best	Ribonuc_red_lgC	103.8	1.30e-29	88.6%	31.1%

D6 medium residues 613-670

PDB

Domain cluster: rep: BORF2__YP_001129452__Human_herpesvirus_4_type_2__12509__D615-667