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ribonucleotide_reductase_large_subunit
Euk-VirPhascolarctid_gammaherpesvirus_1
ribonucleotide_reductase_large_subunit__YP_010087503__Phascolarctid_gammaherpesvirus_1__2249313
Identity
- Accession:
- YP_010087503 ↗
- Protein ID:
- ribonucleotide_reductase_large_subunit
- Kingdom:
- euk
Quality
87.5
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Manticavirus›
Phascolarctid_gammaherpesvirus_1
TaxID: 2249313
Cluster
View cluster (122 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 40-168
Domain cluster:
rep: ribonucleotide_reductase_subunit_1__YP_401655__Human_gammaherpesvirus_4__10376__D15-179
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00317.27 best | Ribonuc_red_lgN | 31.8 | 1.60e-07 | 62.8% | 54.5% |
D2
medium
residues 169-193_404-422_445-548_585-610
Domain cluster:
rep: rr1__YP_009552690__Operophtera_brumata_nucleopolyhedrovirus__1046267__D445-618_684-706
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02867.21 best | Ribonuc_red_lgC | 75.5 | 5.00e-21 | 76.4% | 22.7% |
D3
medium
residues 194-294_364-403
Domain cluster:
rep: IMGVR_UViG_3300028089_000252-3300028089-Ga0255299_10029802__D277-388_452-478
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02867.21 best | Ribonuc_red_lgC | 54.0 | 1.70e-14 | 70.2% | 19.9% |
| PF02867.21 | Ribonuc_red_lgC | 33.3 | 3.10e-08 | 29.1% | 7.2% |
D4
medium
residues 295-363
Domain cluster:
rep: orf61__YP_009044444__Alcelaphine_gammaherpesvirus_2__138184__D298-350
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02867.21 best | Ribonuc_red_lgC | 39.5 | 4.10e-10 | 100.0% | 12.8% |
D5
medium
residues 616-720
Domain cluster:
rep: JM119__YP_238422__Macaca_fuscata_rhadinovirus__272551__D646-749
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02867.21 best | Ribonuc_red_lgC | 42.5 | 5.00e-11 | 100.0% | 20.0% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2wghA00 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.71 | 65.0 | 3.93e-01 | 98.1% | 87.6% |
| 4eacC01 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.57 | 50.0 | 3.80e-01 | 99.0% | 88.2% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3823652 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.83 | 78.0 | 4.77e-01 | 100.0% | 19.1% |
| 3788180 | 109.4.1.120 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Kinetochor_Ybp2 | 0.59 | 46.0 | 3.48e-01 | 82.9% | 70.6% |