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ribonucleotide_reductase_subunit_1
Euk-VirEquid_gammaherpesvirus_2
ribonucleotide_reductase_subunit_1__NP_042658__Equid_gammaherpesvirus_2__12657
Identity
- Accession:
- NP_042658 ↗
- Protein ID:
- ribonucleotide_reductase_subunit_1
- Kingdom:
- euk
Quality
88.1
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Percavirus›
Equid_gammaherpesvirus_2
TaxID: 12657
Cluster
View cluster (122 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 18-180
Domain cluster:
rep: ribonucleotide_reductase_subunit_1__YP_401655__Human_gammaherpesvirus_4__10376__D15-179
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00317.27 best | Ribonuc_red_lgN | 31.5 | 2.10e-07 | 47.9% | 67.5% |
D2
medium
residues 181-208_418-438_460-629_684-700
Domain cluster:
rep: rr1__YP_009552690__Operophtera_brumata_nucleopolyhedrovirus__1046267__D445-618_684-706
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02867.21 best | Ribonuc_red_lgC | 179.5 | 1.50e-52 | 90.2% | 35.7% |
D3
medium
residues 209-310
Domain cluster:
rep: IMGVR_UViG_3300028089_000252-3300028089-Ga0255299_10029802__D277-388_452-478
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02867.21 best | Ribonuc_red_lgC | 58.1 | 9.60e-16 | 100.0% | 20.0% |
CATH (60)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3qfwB02 | 3.20.20.110 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Ribulose bisphosphate carboxylase, large subunit, C-terminal domain | 0.75 | 64.0 | 4.78e-01 | 100.0% | 38.0% |
| 2oejA02 | 3.20.20.110 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Ribulose bisphosphate carboxylase, large subunit, C-terminal domain | 0.74 | 64.0 | 4.58e-01 | 100.0% | 33.0% |
| 3nwrA02 | 3.20.20.110 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Ribulose bisphosphate carboxylase, large subunit, C-terminal domain | 0.73 | 63.0 | 4.55e-01 | 100.0% | 33.6% |
| 3ny7A00 | 3.30.750.24 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain | 0.73 | 61.0 | 5.79e-01 | 100.0% | 77.1% |
| 1telA02 | 3.20.20.110 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Ribulose bisphosphate carboxylase, large subunit, C-terminal domain | 0.73 | 63.0 | 4.55e-01 | 100.0% | 33.9% |
| 5macA02 | 3.20.20.110 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Ribulose bisphosphate carboxylase, large subunit, C-terminal domain | 0.72 | 65.0 | 4.50e-01 | 100.0% | 30.3% |
| 4xs5B00 | 3.30.750.24 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain | 0.72 | 58.0 | 5.62e-01 | 100.0% | 77.2% |
| 4umlA00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.71 | 61.0 | 4.87e-01 | 94.1% | 77.1% |
| 1itxA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.71 | 64.0 | 4.40e-01 | 100.0% | 34.1% |
| 5ailA00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.70 | 61.0 | 5.02e-01 | 94.1% | 85.0% |
| 5fszA00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.70 | 59.0 | 4.44e-01 | 92.2% | 60.8% |
| 1rbaA02 | 3.20.20.110 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Ribulose bisphosphate carboxylase, large subunit, C-terminal domain | 0.70 | 62.0 | 4.47e-01 | 100.0% | 34.2% |
| 4iqyB00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.69 | 60.0 | 4.64e-01 | 94.1% | 71.7% |
| 3cu2A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.69 | 57.0 | 4.27e-01 | 100.0% | 38.0% |
| 1yd9B00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.68 | 58.0 | 4.74e-01 | 94.1% | 84.5% |
| 4emyA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.67 | 60.0 | 4.60e-01 | 100.0% | 54.6% |
| 3v2bA00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.67 | 57.0 | 4.79e-01 | 94.1% | 83.0% |
| 3q71A00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.67 | 57.0 | 4.56e-01 | 94.1% | 79.3% |
| 3paoB00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.66 | 59.0 | 4.22e-01 | 100.0% | 48.1% |
| 1sxjE01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.66 | 50.0 | 4.33e-01 | 100.0% | 51.9% |
| 3t6oA00 | 3.30.750.24 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain | 0.66 | 55.0 | 5.32e-01 | 100.0% | 80.5% |
| 3a21B01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.66 | 59.0 | 4.26e-01 | 100.0% | 36.5% |
| 2jieA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.66 | 60.0 | 3.86e-01 | 100.0% | 32.1% |
| 3eleA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.65 | 59.0 | 4.50e-01 | 100.0% | 50.9% |
| 4bqhA00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.65 | 50.0 | 3.15e-01 | 81.4% | 20.5% |
| 2podA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.65 | 56.0 | 4.13e-01 | 100.0% | 37.2% |
| 5kinC00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.64 | 58.0 | 4.34e-01 | 100.0% | 42.9% |
| 3n4fA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.64 | 57.0 | 4.27e-01 | 100.0% | 39.2% |
| 3e0jA01 | 3.60.21.50 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › | 0.64 | 58.0 | 4.12e-01 | 100.0% | 40.5% |
| 4a8jF00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.64 | 58.0 | 4.27e-01 | 100.0% | 54.6% |
| 1gytL01 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.64 | 55.0 | 4.58e-01 | 95.1% | 90.0% |
| 3qhqB01 | 3.40.50.11940 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.64 | 51.0 | 4.47e-01 | 100.0% | 58.4% |
| 1jhdA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.63 | 44.0 | 3.49e-01 | 74.5% | 36.0% |
| 5kivA01 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.63 | 54.0 | 4.41e-01 | 94.1% | 85.7% |
| 3ru6B00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.63 | 54.0 | 4.23e-01 | 100.0% | 43.7% |
| 3oc9A00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.63 | 48.0 | 3.24e-01 | 81.4% | 26.2% |
| 1vm8B01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.62 | 50.0 | 3.30e-01 | 86.3% | 26.3% |
| 2dx6A00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.62 | 52.0 | 4.55e-01 | 93.1% | 89.9% |
| 1gw1A00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.62 | 55.0 | 3.76e-01 | 100.0% | 38.1% |
| 8ouzD01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.62 | 55.0 | 4.28e-01 | 100.0% | 61.6% |
| 4d86A01 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.61 | 51.0 | 4.29e-01 | 94.1% | 86.2% |
| 2q09A02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.61 | 55.0 | 3.96e-01 | 100.0% | 34.4% |
| 3bc9A02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.61 | 55.0 | 3.95e-01 | 100.0% | 40.5% |
| 3tfxA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.61 | 54.0 | 4.19e-01 | 100.0% | 44.6% |
| 3r7wA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 53.0 | 4.47e-01 | 100.0% | 84.6% |
| 1af7A02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.60 | 51.0 | 4.17e-01 | 94.1% | 61.3% |
| 3uc9A00 | 3.40.50.11960 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.60 | 54.0 | 4.48e-01 | 100.0% | 76.1% |
| 2bb0A02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.60 | 53.0 | 3.86e-01 | 100.0% | 34.2% |
| 1tg7A01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.60 | 52.0 | 3.67e-01 | 100.0% | 40.8% |
| 1i24A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.59 | 55.0 | 4.11e-01 | 100.0% | 60.6% |
| 1jbkA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 49.0 | 4.11e-01 | 100.0% | 50.8% |
| 2xitA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 52.0 | 3.85e-01 | 100.0% | 74.3% |
| 3b5iB01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.58 | 51.0 | 3.93e-01 | 100.0% | 84.5% |
| 3ke3A02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.58 | 52.0 | 3.88e-01 | 100.0% | 45.9% |
| 16pkA02 | 3.40.50.1260 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate kinase, N-terminal domain | 0.58 | 51.0 | 4.10e-01 | 100.0% | 89.4% |
| 2bo4A01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.57 | 46.0 | 3.70e-01 | 99.0% | 45.8% |
| 3s40A01 | 3.40.50.10330 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Probable inorganic polyphosphate/atp-NAD kinase; domain 1 | 0.54 | 48.0 | 4.42e-01 | 100.0% | 96.2% |
| 3ilvA02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.53 | 42.0 | 3.00e-01 | 87.3% | 35.5% |
| 1sqsA00 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.53 | 46.0 | 3.65e-01 | 100.0% | 64.9% |
| 4yhbA02 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.52 | 41.0 | 3.84e-01 | 86.3% | 94.7% |
ECOD (69)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4298539 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.89 | 85.0 | 5.17e-01 | 100.0% | 20.9% |
| 3958480 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.89 | 85.0 | 5.54e-01 | 100.0% | 30.3% |
| 4067125 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.88 | 83.0 | 5.14e-01 | 100.0% | 22.2% |
| 3972491 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.87 | 82.0 | 4.94e-01 | 100.0% | 19.0% |
| 4994375 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.86 | 82.0 | 5.04e-01 | 100.0% | 21.6% |
| 4993733 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.86 | 81.0 | 4.95e-01 | 100.0% | 19.8% |
| 4990406 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.86 | 80.0 | 4.83e-01 | 100.0% | 20.3% |
| 5063882 | 1074.1.1.6 ↗ | alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Ribonuc_red_lgC | 0.85 | 81.0 | 5.35e-01 | 100.0% | 30.1% |
| 3839820 | 2002.1.1.67 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Pro_dh | 0.75 | 68.0 | 4.60e-01 | 100.0% | 30.7% |
| 4073714 | 2002.1.1.1 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › RuBisCO_large | 0.74 | 64.0 | 4.64e-01 | 100.0% | 34.7% |
| 4216693 | 2002.1.1.1 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › RuBisCO_large | 0.74 | 64.0 | 4.54e-01 | 100.0% | 32.2% |
| 4060479 | 2002.1.1.1 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › RuBisCO_large | 0.74 | 63.0 | 4.51e-01 | 100.0% | 32.4% |
| 4887153 | 2002.1.1.1 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › RuBisCO_large | 0.73 | 65.0 | 4.60e-01 | 100.0% | 32.7% |
| 1264276 | 2002.1.1.1 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › RuBisCO_large | 0.73 | 63.0 | 4.51e-01 | 100.0% | 32.5% |
| 4260906 | 2002.1.1.1 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › RuBisCO_large | 0.73 | 63.0 | 4.51e-01 | 100.0% | 33.2% |
| 4100729 | 2002.1.1.1 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › RuBisCO_large | 0.72 | 63.0 | 4.49e-01 | 100.0% | 32.3% |
| 4264896 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.72 | 61.0 | 4.53e-01 | 91.2% | 63.9% |
| 5004916 | 2002.1.1.1 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › RuBisCO_large | 0.72 | 65.0 | 4.49e-01 | 100.0% | 29.8% |
| 4346674 | 2002.1.1.1 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › RuBisCO_large | 0.71 | 63.0 | 4.45e-01 | 100.0% | 31.6% |
| 1501440 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.71 | 61.0 | 5.00e-01 | 94.1% | 84.1% |
| 4141504 | 2002.1.1.41 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › A_deaminase | 0.70 | 63.0 | 4.42e-01 | 100.0% | 47.0% |
| 3872863 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.70 | 61.0 | 4.57e-01 | 95.1% | 64.1% |
| None | — | 0.70 | 63.0 | 4.34e-01 | 100.0% | 45.2% | |
| 5050841 | 7573.1.1.2 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran_N | 0.70 | 61.0 | 5.15e-01 | 100.0% | 58.2% |
| 4683196 | 2002.1.1.41 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › A_deaminase | 0.69 | 62.0 | 4.30e-01 | 100.0% | 45.3% |
| 3975534 | 2002.1.1.37 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Ribul_P_3_epim | 0.68 | 53.0 | 4.00e-01 | 100.0% | 34.0% |
| 3455925 | 2003.1.5.30 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_7 | 0.68 | 58.0 | 4.90e-01 | 93.1% | 64.9% |
| 5047781 | 2007.3.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains | 0.68 | 61.0 | 5.02e-01 | 100.0% | 82.5% |
| 3879370 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.67 | 58.0 | 4.70e-01 | 95.1% | 80.9% |
| 4609205 | 2002.1.1.41 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › A_deaminase | 0.67 | 59.0 | 4.11e-01 | 100.0% | 43.1% |
| 4116051 | 2002.1.1.41 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › A_deaminase | 0.67 | 59.0 | 4.13e-01 | 100.0% | 46.6% |
| 2799839 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.66 | 57.0 | 4.65e-01 | 94.1% | 84.1% |
| 3669441 | 2003.1.5.30 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_7 | 0.66 | 55.0 | 3.78e-01 | 92.2% | 26.4% |
| 340897 | 2002.1.1.37 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Ribul_P_3_epim | 0.66 | 54.0 | 4.07e-01 | 100.0% | 37.7% |
| 1158347 | 2002.1.1.186 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Melibiase_2 | 0.66 | 59.0 | 4.26e-01 | 100.0% | 50.2% |
| 4060003 | 2002.1.1.41 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › A_deaminase | 0.66 | 58.0 | 4.13e-01 | 100.0% | 45.8% |
| 3271634 | 129.1.1.0 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like | 0.66 | 59.0 | 4.60e-01 | 100.0% | 59.5% |
| 4013446 | 2496.1.1.0 ↗ | a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like | 0.65 | 59.0 | 4.59e-01 | 100.0% | 68.2% |
| 3209937 | 2496.1.1.2 ↗ | a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like › STAS | 0.65 | 59.0 | 4.80e-01 | 100.0% | 61.1% |
| 4162123 | 7577.1.1.1 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2 | 0.65 | 58.0 | 3.92e-01 | 100.0% | 30.1% |
| 5074890 | 7545.1.1.1 ↗ | a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DsrE | 0.64 | 55.0 | 5.26e-01 | 100.0% | 80.5% |
| 5010989 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.64 | 57.0 | 4.89e-01 | 99.0% | 75.2% |
| 3477239 | 2004.1.1.366 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NPHP3_N | 0.63 | 56.0 | 4.25e-01 | 100.0% | 60.8% |
| 4038767 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.62 | 53.0 | 4.39e-01 | 94.1% | 89.7% |
| 3894677 | 2004.1.1.120 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ResIII | 0.62 | 51.0 | 4.45e-01 | 100.0% | 57.5% |
| 5049163 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.62 | 52.0 | 4.44e-01 | 92.2% | 88.5% |
| 3601167 | 2496.1.1.0 ↗ | a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like | 0.62 | 54.0 | 4.53e-01 | 100.0% | 63.8% |
| 5049732 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.62 | 52.0 | 4.40e-01 | 94.1% | 89.1% |
| 5072515 | 300.1.1.0 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease | 0.62 | 49.0 | 4.27e-01 | 91.2% | 54.6% |
| 3727378 | 246.2.1.0 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases | 0.61 | 52.0 | 3.87e-01 | 100.0% | 36.2% |
| 4029451 | 2496.1.1.1 ↗ | a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like › CRAL_TRIO | 0.61 | 53.0 | 4.30e-01 | 100.0% | 52.4% |
| 5000246 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.61 | 55.0 | 3.99e-01 | 100.0% | 36.4% |
| 3574194 | 2496.1.1.1 ↗ | a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like › CRAL_TRIO | 0.61 | 50.0 | 4.05e-01 | 92.2% | 63.3% |
| 4311414 | 7529.1.1.1 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro | 0.61 | 51.0 | 4.37e-01 | 94.1% | 89.4% |
| 1854128 | 2004.1.1.213 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Cas_St_Csn2 | 0.61 | 55.0 | 3.78e-01 | 100.0% | 64.0% |
| 3912167 | 2006.1.6.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA | 0.60 | 53.0 | 4.04e-01 | 100.0% | 75.1% |
| 5052654 | 7533.1.1.1 ↗ | a/b three-layered sandwiches › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › PGK | 0.60 | 53.0 | 4.14e-01 | 100.0% | 84.4% |
| 3815889 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.59 | 52.0 | 5.07e-01 | 100.0% | 100.0% |
| 4983045 | 2484.1.1.38 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 | 0.59 | 41.0 | 3.76e-01 | 73.5% | 78.6% |
| 3597901 | 2004.1.1.196 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_22 | 0.59 | 52.0 | 4.13e-01 | 100.0% | 48.4% |
| 4394721 | 2496.1.1.1 ↗ | a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like › CRAL_TRIO | 0.58 | 50.0 | 4.21e-01 | 100.0% | 66.3% |
| 4136596 | 2004.1.1.189 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_16 | 0.58 | 51.0 | 4.25e-01 | 100.0% | 93.0% |
| 3500810 | 2008.1.1.68 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PND | 0.58 | 47.0 | 4.49e-01 | 97.1% | 75.0% |
| 4447489 | 2004.1.1.567 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21, AAA_23 | 0.57 | 51.0 | 3.52e-01 | 100.0% | 79.9% |
| 4613768 | 7533.1.1.1 ↗ | a/b three-layered sandwiches › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › Phosphoglycerate kinase domain 2 › PGK | 0.56 | 49.0 | 3.88e-01 | 100.0% | 82.5% |
| 3816331 | 2003.1.5.30 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_7 | 0.55 | 45.0 | 3.23e-01 | 92.2% | 28.3% |
| 4991926 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.54 | 47.0 | 3.60e-01 | 100.0% | 53.1% |
| 3636009 | 2004.1.1.366 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NPHP3_N | 0.53 | 46.0 | 3.90e-01 | 100.0% | 69.4% |
| 3960482 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.53 | 46.0 | 3.76e-01 | 100.0% | 73.2% |
D4
medium
residues 311-417_701-750
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02867.21 best | Ribonuc_red_lgC | 100.7 | 1.10e-28 | 70.1% | 20.4% |
| PF02867.21 | Ribonuc_red_lgC | 32.7 | 4.60e-08 | 29.3% | 8.0% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2wghA00 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.93 | 90.0 | 5.64e-01 | 98.7% | 60.2% |
| 1r1rA02 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.92 | 89.0 | 5.95e-01 | 100.0% | 73.6% |
| 1xjkA00 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.74 | 71.0 | 4.54e-01 | 100.0% | 62.0% |
| 1peqA02 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.69 | 59.0 | 3.98e-01 | 87.3% | 88.3% |
| 3lmmB05 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 19.0 | 3.02e-01 | 96.2% | 72.1% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4822330 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.98 | 94.0 | 6.36e-01 | 97.5% | 88.2% |
| 3823652 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.93 | 91.0 | 5.89e-01 | 100.0% | 76.3% |
| 4015532 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.93 | 91.0 | 5.86e-01 | 100.0% | 72.2% |
| 3500621 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.93 | 90.0 | 5.94e-01 | 99.4% | 77.5% |
| 3963206 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.92 | 90.0 | 5.89e-01 | 100.0% | 74.2% |
| 3942765 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.92 | 90.0 | 5.91e-01 | 100.0% | 75.5% |
| 4145444 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.92 | 90.0 | 5.92e-01 | 100.0% | 76.2% |
| 996122 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.92 | 90.0 | 5.79e-01 | 100.0% | 71.8% |
| 4067125 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.91 | 88.0 | 5.83e-01 | 98.7% | 77.3% |
| 4298539 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.91 | 89.0 | 5.84e-01 | 100.0% | 76.1% |
| 3590466 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.88 | 86.0 | 5.61e-01 | 100.0% | 77.1% |
| 2504767 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.87 | 82.0 | 5.48e-01 | 97.5% | 78.1% |
| 4990406 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.83 | 79.0 | 5.10e-01 | 99.4% | 76.8% |
| 3958480 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.81 | 57.0 | 4.19e-01 | 72.0% | 57.3% |
| 5058546 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.78 | 76.0 | 4.84e-01 | 100.0% | 73.6% |
| 3972491 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.78 | 75.0 | 4.91e-01 | 100.0% | 76.9% |
| 4190659 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.78 | 76.0 | 4.74e-01 | 100.0% | 78.7% |
| 5030208 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.76 | 74.0 | 4.73e-01 | 100.0% | 69.3% |
| 4937370 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.76 | 73.0 | 4.71e-01 | 100.0% | 80.7% |
| 4963031 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.76 | 73.0 | 4.70e-01 | 100.0% | 70.2% |
| 4934525 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.75 | 72.0 | 4.77e-01 | 100.0% | 73.4% |
| 4564490 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.75 | 72.0 | 4.71e-01 | 99.4% | 73.0% |
D5
medium
residues 630-683
Domain cluster:
rep: BORF2__YP_001129452__Human_herpesvirus_4_type_2__12509__D615-667