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ribonucleotide_reductase_subunit_1
Euk-VirMacacine_alphaherpesvirus_1
ribonucleotide_reductase_subunit_1__NP_851899__Macacine_alphaherpesvirus_1__10325
Identity
- Accession:
- NP_851899 ↗
- Protein ID:
- ribonucleotide_reductase_subunit_1
- Kingdom:
- euk
Quality
79.4
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Simplexvirus›
Macacine_alphaherpesvirus_1
TaxID: 10325
Cluster
View cluster (122 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 849-908
D2
medium
residues 177-270
D3
medium
residues 271-436
Domain cluster:
rep: ribonucleotide_reductase_subunit_1__YP_401655__Human_gammaherpesvirus_4__10376__D15-179
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00317.27 best | Ribonuc_red_lgN | 54.9 | 1.00e-14 | 51.8% | 98.7% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ctoA01 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.64 | 24.0 | 3.76e-01 | 77.1% | 90.2% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3277072 | 1074.1.1.1 ↗ | alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Ribonuc_red_lgN | 0.84 | 76.0 | 7.86e-01 | 98.2% | 100.0% |
| 3519243 | 1074.1.1.0 ↗ | alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases | 0.84 | 77.0 | 7.15e-01 | 100.0% | 79.0% |
| 4976420 | 1074.1.1.0 ↗ | alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases | 0.81 | 46.0 | 5.80e-01 | 98.8% | 89.5% |
| 3607359 | 103.2.1.1 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › Ribonuc_red_lgN | 0.81 | 77.0 | 7.04e-01 | 100.0% | 80.0% |
| 3948801 | 1074.1.1.1 ↗ | alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Ribonuc_red_lgN | 0.79 | 58.0 | 6.68e-01 | 80.7% | 100.0% |
| 4983262 | 1074.1.1.1 ↗ | alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Ribonuc_red_lgN | 0.79 | 45.0 | 6.03e-01 | 98.8% | 100.0% |
| 3515890 | 1074.1.1.1 ↗ | alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Ribonuc_red_lgN | 0.79 | 58.0 | 6.62e-01 | 80.7% | 99.2% |
| 5034061 | 148.1.3.400 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Ribonuc_red_lgN | 0.79 | 47.0 | 4.51e-01 | 90.4% | 52.1% |
| 2325410 | 1074.1.1.2 ↗ | alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Ribonuc_red_lgN,RNR_N | 0.77 | 70.0 | 7.15e-01 | 98.2% | 98.1% |
| 4927667 | 1074.1.1.1 ↗ | alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Ribonuc_red_lgN | 0.68 | 47.0 | 5.60e-01 | 84.3% | 100.0% |
| 4585119 | 1074.1.1.4 ↗ | alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Ribonuc_red_2_N | 0.63 | 48.0 | 5.30e-01 | 77.7% | 99.3% |
| 5030207 | 1074.1.1.4 ↗ | alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Ribonuc_red_2_N | 0.61 | 42.0 | 4.97e-01 | 83.1% | 97.5% |
| 4934524 | 1074.1.1.1 ↗ | alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Ribonuc_red_lgN | 0.56 | 47.0 | 4.65e-01 | 86.1% | 100.0% |
| 4308397 | 1074.1.1.4 ↗ | alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Ribonuc_red_2_N | 0.55 | 45.0 | 4.57e-01 | 85.5% | 86.7% |
| 4413995 | 103.2.1.5 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › Ribonuc_red_2_N | 0.54 | 45.0 | 4.78e-01 | 98.8% | 97.2% |
| 3499336 | 3745.1.1.1 ↗ | alpha bundles › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Na_Ca_ex | 0.52 | 37.0 | 2.91e-01 | 72.3% | 58.6% |
D4
medium
residues 437-552_620-670
Domain cluster:
rep: IMGVR_UViG_3300028089_000252-3300028089-Ga0255299_10029802__D277-388_452-478
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02867.21 best | Ribonuc_red_lgC | 72.5 | 4.10e-20 | 69.5% | 22.3% |
| PF02867.21 | Ribonuc_red_lgC | 53.0 | 3.30e-14 | 31.1% | 9.9% |
D5
medium
residues 674-759
Domain cluster:
rep: ribonucleotide_reductase_large_subunit__YP_009220529__White_spot_syndrome_virus__342409__D469-546
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02867.21 best | Ribonuc_red_lgC | 68.1 | 8.80e-19 | 100.0% | 16.4% |