←Back to structures

ribonucleotide_reductase_subunit_1

Euk-Vir

Psittacid_alphaherpesvirus_1

ribonucleotide_reductase_subunit_1__NP_944412__Psittacid_alphaherpesvirus_1__50294

Identity

Accession:: NP_944412 ↗
Protein ID:: ribonucleotide_reductase_subunit_1
Kingdom:: euk

Quality

87.0 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Iltovirus› Psittacid_alphaherpesvirus_1

TaxID: 50294

Cluster

View cluster (122 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 465-493_516-624

PDB

Domain cluster: rep: Rr1__YP_002854736__Euproctis_pseudoconspersa_nucleopolyhedrovirus__307467__D484-597

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02867.21 best	Ribonuc_red_lgC	95.1	5.90e-27	100.0%	28.6%

D2 medium residues 22-163

PDB

Domain cluster: rep: ribonucleotide_reductase_subunit_1__NP_040142__Human_alphaherpesvirus_3__10335__D1-140

D3 medium residues 164-245_494-515

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00317.27 best	Ribonuc_red_lgN	51.2	1.40e-13	76.0%	80.5%

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1xjkA00	3.20.70.20	Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain ›	0.82	78.0	4.67e-01	100.0%	53.8%
1l1lA01	3.20.70.20	Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain ›	0.77	72.0	4.48e-01	100.0%	59.3%
3cl3A01	1.10.533.10	Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas	0.68	43.0	4.77e-01	86.5%	79.8%
6h7bA01	1.10.1900.10	Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › c-terminal domain of poly(a) binding protein	0.60	36.0	4.10e-01	93.3%	82.4%
1v66A00	1.10.720.30	Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain	0.58	36.0	4.30e-01	76.0%	100.0%
6f7hA00	1.20.1080.10	Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein.	0.56	46.0	3.48e-01	88.5%	86.1%
5jtfB00	3.40.630.30	Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT)	0.53	40.0	3.41e-01	85.6%	48.0%
2ge3A00	3.40.630.30	Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT)	0.53	40.0	3.52e-01	85.6%	51.8%
1un8A02	1.25.40.340	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › DhaL domain	0.52	39.0	3.25e-01	79.8%	92.2%
4b4yA00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.52	44.0	3.93e-01	94.2%	88.6%

ECOD (14)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4976420	1074.1.1.0 ↗	alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases	0.88	58.0	5.83e-01	76.9%	66.7%
5034061	148.1.3.400 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Ribonuc_red_lgN	0.88	56.0	4.42e-01	76.0%	35.3%
4983262	1074.1.1.1 ↗	alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Ribonuc_red_lgN	0.86	57.0	5.96e-01	76.0%	73.7%
4937369	103.2.1.1 ↗	alpha arrays › RuvA-C › ATP cone › ATP cone › Ribonuc_red_lgN	0.85	57.0	6.15e-01	78.8%	78.9%
4993733	2500.1.1.0 ↗	a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel	0.83	79.0	4.81e-01	100.0%	54.4%
4585119	1074.1.1.4 ↗	alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Ribonuc_red_2_N	0.78	53.0	4.84e-01	75.0%	54.1%
4927667	1074.1.1.1 ↗	alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Ribonuc_red_lgN	0.77	56.0	5.41e-01	75.0%	74.8%
4963030	103.2.1.1 ↗	alpha arrays › RuvA-C › ATP cone › ATP cone › Ribonuc_red_lgN	0.76	57.0	5.44e-01	77.9%	84.2%
3676181	5048.1.1.1 ↗	alpha complex topology › Aquaporin-like › Aquaporin-like › Aquaporin-like › MIP	0.58	47.0	3.62e-01	86.5%	84.4%
3698172	213.1.1.0 ↗	a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat)	0.58	52.0	4.04e-01	100.0%	74.8%
144750	150.3.1.3 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine › IL6	0.57	45.0	3.75e-01	84.6%	97.3%
4272477	5048.1.1.1 ↗	alpha complex topology › Aquaporin-like › Aquaporin-like › Aquaporin-like › MIP	0.55	45.0	3.32e-01	87.5%	72.6%
3577880	103.4.1.0 ↗	alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein	0.50	35.0	3.75e-01	98.1%	87.1%
3720817	213.1.1.0 ↗	a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat)	0.50	45.0	3.35e-01	100.0%	71.1%

D4 medium residues 246-288_316-374_422-460

PDB

Domain cluster: rep: IMGVR_UViG_3300028089_000252-3300028089-Ga0255299_10029802__D277-388_452-478

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02867.21 best	Ribonuc_red_lgC	67.9	1.00e-18	48.2%	11.3%
PF02867.21	Ribonuc_red_lgC	35.9	5.00e-09	28.4%	7.6%

D5 medium residues 657-786

PDB

Domain cluster: rep: ribonucleotide_reductase_subunit_1__NP_040142__Human_alphaherpesvirus_3__10335__D627-726

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02867.21 best	Ribonuc_red_lgC	75.7	4.30e-21	96.9%	21.9%