←Back to structures

ribonucleotide_reductase_subunit_1

Euk-Vir

Cyprinid_herpesvirus_2

ribonucleotide_reductase_subunit_1__YP_007003955__Cyprinid_herpesvirus_2__317878

Identity

Accession:: YP_007003955 ↗
Protein ID:: ribonucleotide_reductase_subunit_1
Kingdom:: euk

Quality

88.3 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Alloherpesviridae› Cyvirus› Cyprinid_herpesvirus_2

TaxID: 317878

Cluster

View cluster (122 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-98

PDB

Domain cluster: rep: IMGVR_UViG_3300007266_000133-3300007266-Ga0101450_1063124__D4-90

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03477.22 best	ATP-cone	45.4	1.40e-11	100.0%	97.7%

D2 medium residues 103-152

PDB

Domain cluster: representative

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2wghA00	3.20.70.20	Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain ›	0.97	92.0	5.01e-01	100.0%	7.8%
2jbrA03	1.20.140.10	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3	0.59	43.0	3.01e-01	82.0%	22.2%
4bwxA03	1.10.287.3700	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.52	37.0	3.27e-01	80.0%	83.7%
2wmiA01	3.20.20.80	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases	0.51	46.0	2.72e-01	98.0%	76.0%
6nd0A01	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.51	35.0	2.99e-01	76.0%	98.0%
3goxA03	3.40.1800.10	Alpha Beta › 3-Layer(aba) Sandwich › His-Me finger endonuclease fold › His-Me finger endonucleases	0.50	35.0	3.13e-01	78.0%	72.8%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3519243	1074.1.1.0 ↗	alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases	0.98	93.0	5.93e-01	100.0%	25.0%
3607359	103.2.1.1 ↗	alpha arrays › RuvA-C › ATP cone › ATP cone › Ribonuc_red_lgN	0.97	91.0	5.76e-01	100.0%	24.4%
3277072	1074.1.1.1 ↗	alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Ribonuc_red_lgN	0.96	90.0	6.12e-01	100.0%	32.3%
3594035	1074.1.1.0 ↗	alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases	0.94	87.0	6.24e-01	100.0%	38.5%
4537299	621.1.1.3 ↗	alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Sey1_3HB	0.57	35.0	2.12e-01	82.0%	7.7%
4664382	101.1.2.293 ↗	alpha arrays › HTH › HTH › winged helix domain › IncFII_repA	0.54	41.0	2.88e-01	90.0%	76.9%
3387263	5065.1.1.3 ↗	alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2	0.51	41.0	2.63e-01	100.0%	18.7%

D3 medium residues 226-342_413-452_623-636

PDB

Domain cluster: rep: IMGVR_UViG_3300042092_000730-3300042092-Ga0453238_010587_859_2079__D220-402

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02867.21 best	Ribonuc_red_lgC	153.4	1.30e-44	69.0%	21.9%
PF02867.21	Ribonuc_red_lgC	45.2	7.80e-12	26.3%	7.8%

D4 medium residues 343-412

PDB

Domain cluster: rep: IMGVR_UViG_3300007266_000133-3300007266-Ga0101450_1063125__D8-101

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02867.21 best	Ribonuc_red_lgC	69.1	4.30e-19	100.0%	13.2%

D5 medium residues 453-622

PDB

Domain cluster: rep: rr1__YP_009552690__Operophtera_brumata_nucleopolyhedrovirus__1046267__D445-618_684-706

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02867.21 best	Ribonuc_red_lgC	186.6	1.10e-54	100.0%	31.1%

D6 medium residues 637-702

PDB

Domain cluster: rep: IMGVR_UViG_3300006567_000026-3300006567-Ga0099958_11086953__D213-268

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02867.21 best	Ribonuc_red_lgC	47.1	2.00e-12	100.0%	12.4%

D7 medium residues 703-769

PDB

Domain cluster: rep: Ribonucleotide_reductase_large_subunit_protein__YP_009143381__Raccoonpox_virus__10256__D684-741

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02867.21 best	Ribonuc_red_lgC	66.8	2.20e-18	88.1%	10.7%