ribonucleotide_reductase_subunit_1

Euk-Vir

Rhinolophus_gammaherpesvirus_1

ribonucleotide_reductase_subunit_1__YP_009551875__Rhinolophus_gammaherpesvirus_1__2054179

Identity

88.5 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Percavirus› Rhinolophus_gammaherpesvirus_1

TaxID: 2054179

View cluster (122 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 16-154

PDB

Domain cluster: rep: ribonucleotide_reductase_subunit_1__YP_401655__Human_gammaherpesvirus_4__10376__D15-179

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00317.27 best	Ribonuc_red_lgN	36.6	5.20e-09	36.7%	53.2%

D2 medium residues 311-389

PDB

Domain cluster: rep: orf61__YP_009044444__Alcelaphine_gammaherpesvirus_2__138184__D298-350

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02867.21 best	Ribonuc_red_lgC	57.0	2.00e-15	100.0%	14.5%

D3 medium residues 509-603_625-648

PDB

Domain cluster: rep: Rr1__YP_002854736__Euproctis_pseudoconspersa_nucleopolyhedrovirus__307467__D484-597

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02867.21 best	Ribonuc_red_lgC	57.8	1.10e-15	82.3%	17.4%

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1peqA02	3.20.70.20	Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain ›	0.87	83.0	5.33e-01	100.0%	32.2%
1r1rA02	3.20.70.20	Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain ›	0.83	68.0	4.34e-01	85.7%	24.5%
3cegA00	3.10.110.10	Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme	0.68	50.0	3.76e-01	77.3%	50.0%
3x0uB01	1.20.190.10	Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain	0.57	41.0	3.33e-01	76.5%	76.1%
1f5nA01	1.20.1000.10	Mainly Alpha › Up-down Bundle › Signaling Protein - Interferon-induced Guanylate-binding Protein 1; Chain A, domain 1 › Guanylate-binding protein, C-terminal domain	0.56	41.0	3.11e-01	76.5%	35.8%
3himA00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.54	41.0	3.51e-01	79.8%	78.9%
1np6A02	2.20.25.120	Mainly Beta › Single Sheet › N-terminal domain of TfIIb ›	0.54	15.0	2.65e-01	100.0%	92.6%
2ch5B02	3.30.420.40	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain	0.52	38.0	3.19e-01	74.8%	68.5%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4067125	2500.1.1.2 ↗	a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC	0.85	81.0	5.14e-01	100.0%	26.5%
3744369	159.1.2.25 ↗	alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PXA	0.71	32.0	3.07e-01	79.8%	36.7%
3237916	174.1.1.0 ↗	few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain	0.62	44.0	3.87e-01	73.9%	68.2%
55481	621.1.1.0 ↗	alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain	0.57	42.0	3.12e-01	76.5%	35.0%
4200315	604.6.1.59 ↗	alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › PigN	0.55	39.0	3.82e-01	73.9%	81.5%
3715882	206.1.1.1 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase	0.55	39.0	2.62e-01	74.8%	37.1%

D4 medium residues 649-690_738-749

PDB

Domain cluster: representative