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ribonucleotide_reductase_subunit_1
Euk-VirHuman_gammaherpesvirus_4
ribonucleotide_reductase_subunit_1__YP_401655__Human_gammaherpesvirus_4__10376
Identity
- Accession:
- YP_401655 ↗
- Protein ID:
- ribonucleotide_reductase_subunit_1
- Kingdom:
- euk
Quality
84.8
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Lymphocryptovirus›
human_gammaherpesvirus_4
TaxID: 10376
Cluster
View cluster (122 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 15-179
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00317.27 best | Ribonuc_red_lgN | 60.0 | 2.60e-16 | 54.5% | 92.2% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1xtfA00 | 3.90.1240.10 | Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" | 0.57 | 41.0 | 3.06e-01 | 74.5% | 55.0% |
| 1t6jA03 | 1.10.274.20 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 | 0.56 | 29.0 | 3.56e-01 | 81.2% | 76.7% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3519243 | 1074.1.1.0 ↗ | alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases | 0.84 | 74.0 | 6.89e-01 | 100.0% | 75.5% |
| 3277072 | 1074.1.1.1 ↗ | alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Ribonuc_red_lgN | 0.84 | 74.0 | 7.70e-01 | 100.0% | 97.4% |
| 4976420 | 1074.1.1.0 ↗ | alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases | 0.83 | 46.0 | 5.80e-01 | 87.3% | 86.7% |
| 4983262 | 1074.1.1.1 ↗ | alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Ribonuc_red_lgN | 0.83 | 46.0 | 6.12e-01 | 87.3% | 96.8% |
| 3948801 | 1074.1.1.1 ↗ | alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Ribonuc_red_lgN | 0.81 | 59.0 | 6.77e-01 | 81.2% | 98.4% |
| 5034061 | 148.1.3.400 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Ribonuc_red_lgN | 0.79 | 48.0 | 4.53e-01 | 93.3% | 52.1% |
| 3515890 | 1074.1.1.1 ↗ | alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Ribonuc_red_lgN | 0.78 | 56.0 | 6.43e-01 | 83.6% | 97.6% |
| 4594197 | 1074.1.1.3 ↗ | alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › RNR_Alpha | 0.77 | 50.0 | 5.97e-01 | 72.1% | 93.9% |
| 4927667 | 1074.1.1.1 ↗ | alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Ribonuc_red_lgN | 0.70 | 47.0 | 5.70e-01 | 87.3% | 98.3% |
| 4308397 | 1074.1.1.4 ↗ | alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Ribonuc_red_2_N | 0.58 | 47.0 | 4.76e-01 | 88.5% | 84.8% |
| 4413995 | 103.2.1.5 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › Ribonuc_red_2_N | 0.57 | 47.0 | 5.02e-01 | 88.5% | 96.6% |
D2
medium
residues 292-360
Domain cluster:
rep: orf61__YP_009044444__Alcelaphine_gammaherpesvirus_2__138184__D298-350
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02867.21 best | Ribonuc_red_lgC | 44.2 | 1.60e-11 | 100.0% | 12.8% |
D3
medium
residues 606-668
Domain cluster:
rep: BORF2__YP_001129452__Human_herpesvirus_4_type_2__12509__D615-667