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ribonucleotide_reductase_subunit
Euk-VirBubaline_alphaherpesvirus_1
ribonucleotide_reductase_subunit__YP_009664640__Bubaline_alphaherpesvirus_1__202910
Identity
- Accession:
- YP_009664640 ↗
- Protein ID:
- ribonucleotide_reductase_subunit
- Kingdom:
- euk
Quality
88.7
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Varicellovirus›
Bubaline_alphaherpesvirus_1
TaxID: 202910
Cluster
View cluster (122 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 21-37_52-87
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ecaA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.59 | 47.0 | 3.49e-01 | 86.8% | 47.1% |
| 1sxjD03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.55 | 43.0 | 3.65e-01 | 86.8% | 63.7% |
| 3c2bA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.55 | 37.0 | 2.78e-01 | 71.7% | 45.6% |
D2
medium
residues 214-229_456-636_704-735
Domain cluster:
rep: rr1__YP_009552690__Operophtera_brumata_nucleopolyhedrovirus__1046267__D445-618_684-706
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02867.21 best | Ribonuc_red_lgC | 155.2 | 3.50e-45 | 81.7% | 33.2% |
| PF02867.21 | Ribonuc_red_lgC | 28.6 | 7.90e-07 | 15.3% | 5.9% |
D3
medium
residues 230-345_404-455
Domain cluster:
rep: IMGVR_UViG_3300042092_000730-3300042092-Ga0453238_010587_859_2079__D220-402
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02867.21 best | Ribonuc_red_lgC | 79.5 | 3.10e-22 | 71.4% | 22.5% |
| PF02867.21 | Ribonuc_red_lgC | 46.3 | 3.50e-12 | 31.6% | 9.9% |
D4
medium
residues 346-403
Domain cluster:
rep: orf61__YP_009044444__Alcelaphine_gammaherpesvirus_2__138184__D298-350
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2wghA00 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.94 | 81.0 | 4.48e-01 | 100.0% | 8.2% |
| 2i9uA01 | 2.30.40.10 | Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 | 0.56 | 47.0 | 3.93e-01 | 100.0% | 90.1% |
| 1qh5A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.54 | 44.0 | 3.01e-01 | 98.3% | 46.2% |
| 1mwqA00 | 3.30.70.1060 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel | 0.52 | 39.0 | 3.29e-01 | 81.0% | 70.0% |
| 2h2yA01 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.51 | 41.0 | 3.32e-01 | 89.7% | 92.2% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3823652 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.94 | 82.0 | 4.56e-01 | 100.0% | 9.4% |
| 4015532 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.94 | 81.0 | 4.55e-01 | 100.0% | 9.2% |
| 996122 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.93 | 79.0 | 4.40e-01 | 100.0% | 8.9% |
| 4822330 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.90 | 81.0 | 4.64e-01 | 100.0% | 12.0% |
| 3949988 | 7581.1.1.19 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N+Thiolase_C | 0.57 | 46.0 | 2.84e-01 | 96.6% | 77.9% |
| 3963771 | 632.2.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains | 0.55 | 41.0 | 3.66e-01 | 81.0% | 55.3% |
| 3196010 | 3930.1.1.15 ↗ | alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase › DEAD, Helicase_C | 0.52 | 36.0 | 2.21e-01 | 77.6% | 31.2% |
D5
medium
residues 637-703