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rifampicin_resistance_N3L_protein
Euk-VirPenguinpox_virus
rifampicin_resistance_N3L_protein__YP_009046050__Penguinpox_virus__648998
Identity
- Accession:
- YP_009046050 ↗
- Protein ID:
- rifampicin_resistance_N3L_protein
- Kingdom:
- euk
Quality
86.6
mean pLDDT
Cluster
View cluster (35 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 35-224
Domain cluster:
rep: major_capsid_protein__YP_009508644__Common_midwife_toad_virus__540070__D48-85_114-155_177-212_243-266
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03340.20 best | Pox_Rif | 285.6 | 1.00e-84 | 100.0% | 34.7% |
D2
medium
residues 225-276_409-552
Domain cluster:
rep: putative_capsid_protein_4__YP_003969808__Cafeteria_roenbergensis_virus_BV-PW1__693272__D326-494
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03340.20 best | Pox_Rif | 231.6 | 2.20e-68 | 73.5% | 26.4% |
| PF03340.20 | Pox_Rif | 57.1 | 1.60e-15 | 27.0% | 9.0% |
D3
medium
residues 277-304_366-408
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03340.20 best | Pox_Rif | 60.8 | 1.20e-16 | 60.6% | 7.9% |
| PF03340.20 | Pox_Rif | 36.1 | 3.70e-09 | 42.2% | 5.3% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3g2bA00 | 1.10.10.1150 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) | 0.51 | 26.0 | 2.42e-01 | 76.1% | 35.6% |
ECOD (1)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 185528 | 3298.1.1.1 ↗ | a+b complex topology › Insertion domain in vaccinia virus scaffolding protein D13 › Insertion domain in vaccinia virus scaffolding protein D13 › Insertion domain in vaccinia virus scaffolding protein D13 › Pox_Rif | 0.99 | 96.0 | 7.16e-01 | 100.0% | 88.0% |
D4
medium
residues 305-365
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03340.20 best | Pox_Rif | 93.6 | 1.50e-26 | 100.0% | 11.1% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ks7A02 | 2.60.120.230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 39.0 | 2.93e-01 | 83.6% | 82.7% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 185528 | 3298.1.1.1 ↗ | a+b complex topology › Insertion domain in vaccinia virus scaffolding protein D13 › Insertion domain in vaccinia virus scaffolding protein D13 › Insertion domain in vaccinia virus scaffolding protein D13 › Pox_Rif | 0.93 | 89.0 | 6.37e-01 | 100.0% | 40.7% |
| 3191500 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 41.0 | 3.13e-01 | 86.9% | 72.9% |
| 3727387 | 1.1.7.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_1 | 0.51 | 41.0 | 3.17e-01 | 100.0% | 45.7% |