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rifcsphigho2-12_scaffold_combined_curated_prodigal-single.1__X__X__00010

Bact-Vir

rifcsphigho2-12_scaffold_combined_curated_prodigal-single.1__X__X__00010

Identity

Kingdom:
phage

Quality

91.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-76
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 49.0 5.10e-01 97.4% 85.9%
3os7A00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.65 58.0 3.75e-01 98.7% 48.7%
1attA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.63 47.0 3.80e-01 78.9% 72.1%
6l4cA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.62 48.0 3.63e-01 84.2% 67.9%
3s7iB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.62 48.0 3.62e-01 84.2% 67.6%
1cauA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.62 48.0 3.63e-01 84.2% 68.5%
3nreA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.61 54.0 3.61e-01 97.4% 46.0%
3ndaA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.61 46.0 3.82e-01 80.3% 70.5%
1ms9A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.61 53.0 3.45e-01 100.0% 46.9%
4da5A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 51.0 5.05e-01 96.1% 97.6%
4i4kA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 53.0 4.41e-01 100.0% 92.8%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 47.0 4.65e-01 98.7% 81.5%
2je2A00 3.50.70.20 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › Cytochrome P460 0.59 49.0 3.85e-01 89.5% 78.3%
3gwrB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 53.0 4.45e-01 98.7% 95.3%
3b8lA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 53.0 4.28e-01 98.7% 91.5%
3f9sB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 51.0 4.20e-01 97.4% 89.4%
3kztA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 49.0 4.13e-01 93.4% 90.2%
1w7cA03 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 49.0 4.39e-01 97.4% 82.6%
3loyA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 52.0 4.78e-01 100.0% 90.1%
2vsmA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.58 52.0 3.28e-01 100.0% 48.4%
2v95A02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.58 45.0 3.76e-01 82.9% 69.8%
4lgqA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 50.0 4.17e-01 97.4% 92.5%
1sjwA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 50.0 4.14e-01 98.7% 88.7%
4u0wA02 3.40.1410.10 Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like 0.57 46.0 3.61e-01 88.2% 84.9%
1jkgB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 50.0 3.86e-01 98.7% 83.9%
2f86B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 50.0 4.22e-01 98.7% 98.4%
4o9dA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 51.0 3.23e-01 100.0% 25.6%
1v3eA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.57 50.0 3.16e-01 100.0% 27.4%
2i0rA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 51.0 3.30e-01 100.0% 27.6%
5c98B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.57 47.0 3.94e-01 90.8% 72.9%
3kkgA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 49.0 3.99e-01 97.4% 88.2%
4nzrM02 2.160.20.180 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.56 44.0 3.38e-01 85.5% 66.3%
3ehcB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 48.0 4.13e-01 98.7% 93.0%
1lj5A02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.56 48.0 3.85e-01 96.1% 74.7%
4rzkA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 36.0 3.47e-01 82.9% 56.3%
2byoA00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.56 48.0 3.63e-01 96.1% 87.4%
3c5iD01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 46.0 4.64e-01 96.1% 98.7%
4kcaA02 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 49.0 3.10e-01 100.0% 37.4%
3wodG00 2.30.30.1250 Mainly Beta › Roll › SH3 type barrels. › 0.55 47.0 4.04e-01 97.4% 64.6%
5tgnA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 48.0 4.30e-01 100.0% 99.1%
2e8yA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 40.0 3.78e-01 76.3% 95.6%
4id2A00 2.40.128.510 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 0.54 46.0 3.90e-01 98.7% 81.6%
7dd9A02 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.54 47.0 3.29e-01 98.7% 51.4%
6a5gA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 45.0 3.76e-01 97.4% 91.9%
6gmhC01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.52 36.0 2.96e-01 72.4% 84.2%
4khbC00 2.30.29.210 Mainly Beta › Roll › PH-domain like › FACT complex subunit Spt16p/Cdc68p 0.52 38.0 3.49e-01 80.3% 67.9%
3c7fA02 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 43.0 2.91e-01 100.0% 32.5%
2dleA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 39.0 3.79e-01 85.5% 84.9%
1k85A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 38.0 3.70e-01 84.2% 81.8%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3697524 9.2.1.7 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › PF30970 0.65 49.0 4.71e-01 94.7% 68.9%
3937192 5.1.11.27 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › Det1 0.63 56.0 3.59e-01 100.0% 43.2%
3950026 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.63 57.0 4.69e-01 100.0% 94.8%
3441483 5.1.3.68 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 0.62 55.0 3.57e-01 100.0% 34.5%
3332187 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.62 45.0 2.95e-01 76.3% 22.8%
3295485 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.61 46.0 2.96e-01 78.9% 19.7%
4512840 247.1.1.34 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › MBL_MAP1B 0.61 45.0 2.87e-01 77.6% 17.1%
3962922 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.61 55.0 4.24e-01 98.7% 77.6%
3286225 243.1.1.28 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.60 53.0 4.48e-01 100.0% 99.2%
3179577 220.1.1.16 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF1681 0.60 51.0 4.03e-01 92.1% 94.2%
154434 243.1.1.28 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.60 53.0 4.41e-01 100.0% 92.8%
3279484 243.1.1.28 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.60 53.0 4.41e-01 100.0% 97.0%
3239126 243.1.1.85 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26531 0.60 53.0 4.37e-01 100.0% 87.9%
185965 3437.1.1.1 ↗ a+b two layers › Cytochrome P460 › Cytochrome P460 › Cytochrome P460 › Cytochrome_P460 0.60 48.0 3.82e-01 88.2% 78.3%
3637504 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.59 52.0 3.14e-01 100.0% 24.1%
3216801 5.1.2.9 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Apyrase 0.59 52.0 3.42e-01 100.0% 33.7%
2833528 5.1.3.5 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › HN 0.58 51.0 3.15e-01 100.0% 40.0%
3449212 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.58 51.0 3.56e-01 96.1% 34.5%
None — 0.58 52.0 3.38e-01 100.0% 33.2%
4419813 9.4.1.4 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains › PF26335 0.58 50.0 4.03e-01 96.1% 89.3%
1087544 243.1.1.10 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL 0.58 50.0 4.17e-01 97.4% 91.8%
3062082 5.1.3.5 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › HN 0.57 51.0 3.19e-01 100.0% 26.6%
4927499 243.1.1.10 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL 0.57 50.0 3.90e-01 97.4% 77.0%
2163935 243.1.1.10 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL 0.57 49.0 4.13e-01 97.4% 89.6%
5010861 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 50.0 3.18e-01 100.0% 29.9%
4974050 243.1.1.25 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 0.56 49.0 4.06e-01 97.4% 91.1%
3495245 3369.1.1.0 ↗ beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 0.56 48.0 3.64e-01 98.7% 43.0%
3279671 243.1.1.10 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL 0.56 49.0 4.07e-01 98.7% 94.1%
4980058 243.1.1.10 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL 0.56 48.0 4.01e-01 97.4% 91.1%
1146570 243.15.1.1 ↗ a+b two layers › Cystatin-like › Thermus phage P23-45 gp39 › Thermus phage P23-45 gp39 › P23-45_gp39_N 0.55 47.0 4.04e-01 97.4% 64.6%
3970611 243.1.1.10 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL 0.55 46.0 3.95e-01 98.7% 88.1%
4055253 5.1.4.7 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1 0.55 50.0 3.15e-01 100.0% 30.6%
3287136 243.1.1.25 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 0.55 47.0 4.03e-01 98.7% 97.7%
3602454 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.55 40.0 4.13e-01 78.9% 98.6%
4314504 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.55 39.0 3.29e-01 76.3% 94.1%
2443845 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.54 47.0 3.83e-01 98.7% 85.4%
3456076 5.1.3.159 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF7595 0.54 49.0 3.43e-01 100.0% 41.4%
3277859 243.1.1.25 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 0.54 47.0 3.98e-01 98.7% 97.7%
3428134 243.3.1.19 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.54 46.0 4.31e-01 100.0% 96.0%
3781836 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.54 48.0 2.89e-01 100.0% 29.0%
3472659 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.54 45.0 3.61e-01 97.4% 48.6%
5051779 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.54 47.0 4.17e-01 100.0% 67.3%
3565146 109.4.1.816 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RALGAPB_N 0.53 44.0 2.49e-01 92.1% 8.1%
3729387 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.53 45.0 4.00e-01 94.7% 89.1%
5014023 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.53 44.0 3.44e-01 97.4% 82.6%
3788453 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.52 47.0 3.13e-01 98.7% 39.6%
3392707 3692.1.1.0 ↗ a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain 0.52 42.0 3.39e-01 89.5% 72.9%
2443846 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.52 44.0 3.53e-01 96.1% 80.3%
3725346 243.1.1.25 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 0.51 42.0 3.58e-01 92.1% 74.6%
3865129 5.1.4.394 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_FAM234A_B 0.51 46.0 2.80e-01 100.0% 19.2%
4266402 3692.1.1.1 ↗ a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall 0.51 43.0 3.66e-01 97.4% 56.0%
3847699 206.1.1.13 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Alpha_kinase 0.51 42.0 2.86e-01 92.1% 42.8%
5052022 1.1.5.10 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.51 39.0 3.23e-01 88.2% 89.9%
3635619 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.51 44.0 3.27e-01 100.0% 52.6%
3519582 11.1.1.958 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7652 0.50 35.0 3.12e-01 98.7% 47.5%
3410338 2485.1.1.155 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin, PF26968, PF26973 0.50 39.0 2.52e-01 85.5% 34.4%