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rifcsphigho2-12_scaffold_combined_curated_prodigal-single.1__X__X__00014
Bact-Virrifcsphigho2-12_scaffold_combined_curated_prodigal-single.1__X__X__00014
Identity
- Kingdom:
- phage
Quality
71.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-88
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF09652.17 best | Cas_VVA1548 | 44.0 | 2.60e-11 | 98.8% | 95.6% |
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2j6bA00 | 3.40.50.11170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Uncharacterised protein PF08960, DUF1874 | 0.78 | 59.0 | 5.41e-01 | 100.0% | 62.4% |
| 3vzpC00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.65 | 55.0 | 4.10e-01 | 98.8% | 92.6% |
| 3uj9A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.62 | 51.0 | 3.77e-01 | 94.2% | 96.9% |
| 6abiA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.61 | 53.0 | 4.65e-01 | 100.0% | 94.1% |
| 1e8cA02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.61 | 52.0 | 3.88e-01 | 97.7% | 89.1% |
| 4obvA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.61 | 53.0 | 3.88e-01 | 98.8% | 59.7% |
| 4a8jB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 52.0 | 3.96e-01 | 100.0% | 78.2% |
| 3d1lB01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 49.0 | 4.15e-01 | 100.0% | 82.0% |
| 1z0sA01 | 3.40.50.10330 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Probable inorganic polyphosphate/atp-NAD kinase; domain 1 | 0.58 | 52.0 | 4.63e-01 | 100.0% | 83.9% |
| 4rxlA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.58 | 44.0 | 4.02e-01 | 82.6% | 94.0% |
| 4kigA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.58 | 51.0 | 4.05e-01 | 100.0% | 98.3% |
| 2zjgA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.57 | 49.0 | 3.58e-01 | 98.8% | 56.2% |
| 2x5dD02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.57 | 49.0 | 3.66e-01 | 100.0% | 57.9% |
| 4g4pA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.57 | 41.0 | 4.02e-01 | 77.9% | 76.0% |
| 3ll7A02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.57 | 49.0 | 3.90e-01 | 100.0% | 76.3% |
| 4r75A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.56 | 47.0 | 3.87e-01 | 94.2% | 92.0% |
| 3fzgA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 48.0 | 3.79e-01 | 100.0% | 72.4% |
| 3gu3A01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 47.0 | 3.93e-01 | 100.0% | 84.4% |
| 2ozpA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 47.0 | 3.89e-01 | 98.8% | 94.4% |
| 1nlfA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 47.0 | 3.44e-01 | 100.0% | 74.0% |
| 1hslA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.54 | 42.0 | 4.09e-01 | 88.4% | 78.2% |
| 2r6fA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 46.0 | 3.67e-01 | 100.0% | 84.1% |
| 3tixB02 | 3.40.1010.30 | Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › | 0.53 | 47.0 | 4.17e-01 | 100.0% | 73.4% |
| 1zkdA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 46.0 | 3.73e-01 | 100.0% | 79.7% |
| 1omoA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 46.0 | 3.72e-01 | 100.0% | 94.2% |
| 4bu0A02 | 3.40.50.10190 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain | 0.52 | 41.0 | 4.20e-01 | 100.0% | 89.3% |
| 8db3B02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 45.0 | 3.45e-01 | 97.7% | 64.4% |
| 3pp8A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 44.0 | 3.98e-01 | 100.0% | 93.7% |
| 6iheA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 46.0 | 3.95e-01 | 100.0% | 95.7% |
| 1hyhA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 45.0 | 3.88e-01 | 97.7% | 97.2% |
| 1up7A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 45.0 | 3.93e-01 | 100.0% | 97.1% |
| 2fsuA00 | 3.40.50.11310 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Bacterial phosphonate metabolism protein PhnH | 0.51 | 43.0 | 3.52e-01 | 95.3% | 78.8% |
| 3rojA02 | 3.40.190.90 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › | 0.51 | 45.0 | 3.66e-01 | 100.0% | 65.9% |
| 3kosA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.51 | 42.0 | 4.00e-01 | 93.0% | 97.1% |
| 1xt9A00 | 3.40.395.10 | Alpha Beta › 3-Layer(aba) Sandwich › Adenoviral Proteinase; Chain › Adenoviral Proteinase; Chain A | 0.50 | 41.0 | 3.16e-01 | 90.7% | 71.6% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 86563 | 4259.1.1.0 ↗ | a+b complex topology › STIV B116-like › STIV B116-like › STIV B116-like | 0.77 | 58.0 | 5.33e-01 | 100.0% | 62.4% |
| 5077023 | 2008.1.1.5 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NucS_C | 0.66 | 55.0 | 4.55e-01 | 95.3% | 91.5% |
| 4985606 | 2003.2.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Formate dehydrogenase/DMSO reductase, domains 2 and 3 | 0.61 | 42.0 | 3.20e-01 | 72.1% | 82.7% |
| 9411 | 2003.1.5.26 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_28 | 0.60 | 53.0 | 3.52e-01 | 100.0% | 75.4% |
| 3705058 | 206.1.3.12 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › TTL | 0.58 | 48.0 | 3.15e-01 | 95.3% | 85.8% |
| 4148640 | 2003.1.1.43 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_3 | 0.57 | 49.0 | 4.18e-01 | 98.8% | 91.9% |
| 3583762 | 2003.1.10.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain | 0.56 | 39.0 | 4.39e-01 | 97.7% | 96.9% |
| 5053540 | 2003.1.5.67 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_12 | 0.55 | 45.0 | 3.47e-01 | 94.2% | 97.3% |
| 3587059 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.55 | 49.0 | 4.34e-01 | 100.0% | 92.0% |
| 3232914 | 2007.1.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like | 0.55 | 49.0 | 4.47e-01 | 100.0% | 98.3% |
| 5070116 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.55 | 47.0 | 3.63e-01 | 100.0% | 78.6% |
| 4995477 | 2007.1.3.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › UPF0004 | 0.55 | 44.0 | 3.93e-01 | 89.5% | 97.6% |
| 3590790 | 2007.2.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Phosphotyrosine protein phosphatases I-like | 0.54 | 46.0 | 4.48e-01 | 100.0% | 86.3% |
| 3324399 | 2007.2.2.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Phosphotyrosine protein phosphatases I-like › PTPase | 0.54 | 47.0 | 4.63e-01 | 100.0% | 93.3% |
| 4323968 | 2007.2.1.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins › Flavodoxin_NdrI | 0.54 | 47.0 | 4.17e-01 | 100.0% | 89.1% |
| 3813686 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.54 | 46.0 | 3.37e-01 | 100.0% | 83.0% |
| 4055450 | 2006.1.2.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases › DHH | 0.54 | 44.0 | 3.53e-01 | 94.2% | 83.2% |
| 4241902 | 7568.1.1.2 ↗ | a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › PTCB-BRCT | 0.54 | 44.0 | 4.00e-01 | 90.7% | 91.7% |
| 4450793 | 4126.1.1.6 ↗ | a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › DabA | 0.54 | 47.0 | 3.36e-01 | 100.0% | 75.2% |
| 5068385 | 2011.2.1.0 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like | 0.53 | 45.0 | 4.10e-01 | 98.8% | 96.7% |
| 3738382 | 219.1.1.16 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C48 | 0.53 | 42.0 | 3.23e-01 | 94.2% | 87.1% |
| 4930051 | 2004.1.1.790 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GvpD_P-loop | 0.52 | 45.0 | 3.31e-01 | 96.5% | 87.2% |
| 3343403 | 7568.1.1.0 ↗ | a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain | 0.52 | 42.0 | 3.90e-01 | 100.0% | 67.0% |
| 3422934 | 7568.1.1.1 ↗ | a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT | 0.52 | 43.0 | 4.23e-01 | 100.0% | 83.2% |
| 3252479 | 7568.1.1.1 ↗ | a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT | 0.52 | 42.0 | 4.24e-01 | 91.9% | 89.4% |
| 3614651 | 7568.1.1.1 ↗ | a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT | 0.52 | 40.0 | 4.19e-01 | 98.8% | 90.0% |
| 3470009 | 7568.1.1.0 ↗ | a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain | 0.52 | 42.0 | 4.17e-01 | 100.0% | 85.6% |
| 3835954 | 129.1.1.56 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › CER1-like_C | 0.51 | 42.0 | 3.37e-01 | 96.5% | 86.0% |
| 3233271 | 7568.1.1.2 ↗ | a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › PTCB-BRCT | 0.51 | 42.0 | 4.01e-01 | 100.0% | 78.0% |
| 3853418 | 7568.1.1.1 ↗ | a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT | 0.51 | 41.0 | 3.87e-01 | 100.0% | 70.9% |
| 3911275 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.51 | 43.0 | 2.89e-01 | 100.0% | 93.9% |
| 3782371 | 7568.1.1.2 ↗ | a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › PTCB-BRCT | 0.51 | 42.0 | 3.73e-01 | 91.9% | 86.4% |
| 4121415 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.51 | 42.0 | 3.31e-01 | 94.2% | 97.4% |
| 3737961 | 219.1.1.16 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C48 | 0.50 | 41.0 | 3.16e-01 | 91.9% | 71.2% |
| 3621160 | 7505.1.1.1 ↗ | a/b three-layered sandwiches › Kinesin-like protein KIF23 C-terminal domain › Kinesin-like protein KIF23 C-terminal domain › Kinesin-like protein KIF23 C-terminal domain › MKLP1_Arf_bdg | 0.50 | 40.0 | 4.08e-01 | 100.0% | 88.2% |
| 3616607 | 7568.1.1.2 ↗ | a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › PTCB-BRCT | 0.50 | 42.0 | 4.00e-01 | 100.0% | 80.0% |
| 3259606 | 7568.1.1.2 ↗ | a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › PTCB-BRCT | 0.50 | 43.0 | 4.08e-01 | 100.0% | 81.0% |